Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-34 >seq3 Length=3164952 Score = 161 bits (178), Expect = 1e-34 Identities = 390/583 (67%), Gaps = 13/583 (2%) Strand=Plus/Minus Query 16943 TTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA 17002 |||||||| | |||| ||||| || ||||| ||| | || ||||| | || || Sbjct 1892499 TTAAGATGACTGAACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATC 1892440 Query 17003 AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCG 17062 |||||||||||||| || || || ||||| ||||||||||| | ||| || || | Sbjct 1892439 AGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAA 1892380 Query 17063 GCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAA--TCGTTCGG 17120 || || || || || ||||| || || || || | || ||||| | || |||| || Sbjct 1892379 GCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGT--GG 1892322 Query 17121 CGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGC 17180 | |||||| || || | ||||| | | ||||||||| || ||||| | || Sbjct 1892321 CAAACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGC 1892262 Query 17181 AATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACG 17240 | || || || || | || || | | | ||| ||| || || | Sbjct 1892261 ATGGTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGG 1892202 Query 17241 TATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGT 17300 |||||||||| || ||| |||| ||||| ||||| ||||| || |||||||| | Sbjct 1892201 TATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCAT 1892142 Query 17301 AAAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCGTTCCGCTAGATTTTCG 17359 |||| || ||| |||| || ||| ||||| | || | || || ||| | ||||| ||| Sbjct 1892141 AAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCG-AAAACCGCTCCACCAGATTCTCG 1892083 Query 17360 TTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATATATGCTTAATGAAATATTTTT 17417 || || || |||||| ||||| ||||| |||| | ||||| | ||||||| || Sbjct 1892082 TTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGAT--ATGAAATGGCGTT 1892025 Query 17418 CGTCCGGTGTAAG---AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGG 17474 ||| | || | || |||||| | ||||||||| ||||| | ||||||| Sbjct 1892024 CGTTGTCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGG 1891965 Query 17475 GGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||||||| |||| || || || ||||| | |||||| Sbjct 1891964 ACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1891922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545509429520