Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq1 98.7 8e-16
>seq6
Length=2247897
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | |||||| ||||||||||| |||||||||||||| | || || || ||||
Sbjct 301083 AGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCT 301024
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| |||||||| | || | | |||||||||| ||| | ||| ||||| ||
Sbjct 301023 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 300964
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| ||||| | ||| || ||| | ||| || | ||||| |||
Sbjct 300963 TGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTC 300904
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| || | || ||||| || ||||||||
Sbjct 300903 TTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300872
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 20968 CCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCA 21027
||| ||| | || |||||||| |||||||||||||| | ||||| || ||||||| |
Sbjct 300797 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300738
Query 21028 GCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGA 21087
|||| |||||||| | || | | ||||||||| ||| | ||| |||||||| ||
Sbjct 300737 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300678
Query 21088 TCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGC 21147
|||| || || | ||| || ||| | |||| || | || || ||||| |
Sbjct 300677 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300618
Query 21148 CGGTTAACGTTTTGACAAATATTTGCAT 21175
| || ||||| || || || || |||||
Sbjct 300617 CAGTCAACGTCTTCACGAAGATCTGCAT 300590
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/212 (69%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 20965 GCACC-ATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||| | ||| | || |||||||| || ||||||||||||| ||||| || |||||
Sbjct 300514 GCACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCC 300455
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| |||||||| | || | | ||||||||| ||| | |||||||||||
Sbjct 300454 TCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCC 300395
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||| ||||| | ||| || || | |||| || | ||| || |||
Sbjct 300394 TGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTC 300335
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || || | || || || || || |||||
Sbjct 300334 TTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 300303
>seq1
Length=3258266
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| || ||||| ||||| | ||||| || | ||||| ||||| ||||||
Sbjct 2272689 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCC 2272630
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| ||||||| | ||| || ||| || | ||| ||||| || |||||| |||
Sbjct 2272629 GCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTG 2272570
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || || | ||| |||| ||| ||||||||||| || | |||
Sbjct 2272569 ACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTT 2272510
Query 21159 TTGACAAATATTTGCAT 21175
|| ||||| || |||||
Sbjct 2272509 TTCACAAAGATCTGCAT 2272493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422259127952024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |