Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3 253 2e-62
seq6 138 1e-27
seq1 116 4e-21
>seq3
Length=3164952
Score = 253 bits (280), Expect = 2e-62
Identities = 402/572 (70%), Gaps = 11/572 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||||||||| || || ||||| |||||||| | ||| ||| ||||||||
Sbjct 1890712 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1890653
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|| || || | | | ||||||| | ||| | |||||||| ||||| || || ||
Sbjct 1890652 TCAAAAGATCTCCA-CGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTC 1890594
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| || || || ||||| |||||| || ||||||||||||||||| || || |||||
Sbjct 1890593 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1890534
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| | | ||||| |||| ||| |||||||| ||||||||||| || || || ||
Sbjct 1890533 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1890474
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928
||| || | ||| || | || || || ||||| || ||| | | | ||
Sbjct 1890473 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1890414
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
| | || || | || | || | ||||| || || || |||||| ||||||
Sbjct 1890413 GCAACGCGAGTACC---TTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1890357
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
|| ||||| || ||||||||| ||| | || | || | ||||| | || ||
Sbjct 1890356 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1890297
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
|||||| || || |||||| | ||||| || || ||||||| | || || ||| | ||
Sbjct 1890296 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1890237
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
||| || ||||||||||| || || || ||| ||| || |||||| | ||||||||
Sbjct 1890236 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1890177
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200
||||| |||||| || || ||||||||||
Sbjct 1890176 AATGCATACCGACTTCGCATGCTTGCTGTTCA 1890145
Score = 221 bits (244), Expect = 1e-52
Identities = 395/573 (69%), Gaps = 13/573 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| || ||| |||| ||||| ||||| ||| ||| | || ||
Sbjct 1891922 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1891981
Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||| || | ||||||| || | |||| |||||||| |||||||||||
Sbjct 1891982 TCCAAAGATATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCA 1892041
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811
| || ||||| ||||| ||||| |||||| || ||||||||||||||||| |||||
Sbjct 1892042 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1892101
Query 116812 -TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||||| | || || || | || || | || || || || || ||||| ||| |
Sbjct 1892102 TTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGA 1892159
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCT---T 116927
|||| ||| | |||||||||| || || ||||||||| || ||| | |||| |
Sbjct 1892160 TGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACAT---CTCTGACT 1892216
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| || || || | || || | |||||||| || || |||||||| |||||
Sbjct 1892217 CTCAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGA 1892276
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
|||||||||| || | |||||| | | | | | | | || | | | | ||||||
Sbjct 1892277 CCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTGG 1892336
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
| |||||||| || || || ||||||| || || ||| || | || || ||||| |
Sbjct 1892337 CGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1892396
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
||||||| || |||||||| || | || || ||||| || || ||||||| |
Sbjct 1892397 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1892456
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200
| ||||| || ||||||||| | ||||||
Sbjct 1892457 GGATGCATACAGATTTTGCCTGTCTCTTGTTCA 1892489
>seq6
Length=2247897
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||||||||| || || || |||| ||||| | |
Sbjct 300872 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300931
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || |||| || || |||||||| ||| |||||||
Sbjct 300932 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300990
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| ||||| || |||||| ||
Sbjct 300991 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 301050
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| ||||||||| |||| ||||||| ||
Sbjct 301051 CATTCAGAAGGAGTCCACCTTGCATCTCGT 301080
Score = 131 bits (144), Expect = 2e-25
Identities = 165/223 (74%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || || |||||| |||| || || | |
Sbjct 300303 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 300362
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || |||| ||||| || || |||||| | |||||
Sbjct 300363 GACACCATCGATAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCA 300421
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| ||
Sbjct 300422 GCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAA 300481
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
||||||||||||| | || || ||||| | |||| ||||||
Sbjct 300482 CATCCAGAAGGAGTCGACCCTTCATCT--CGGTGCGTTTGAGG 300522
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||| | || || || || ||||| |||| || || | |
Sbjct 300590 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 300649
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| |||||| || || | ||||| |||||||||||| | |||||
Sbjct 300650 GACACGATCGATAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 300708
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| ||
Sbjct 300709 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 300768
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
||| ||||||||| | || || |||
Sbjct 300769 CATTCAGAAGGAGTCGACCCTCCAT 300793
Score = 114 bits (126), Expect = 1e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| || ||||| |||| ||||| | |
Sbjct 301100 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 301159
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| ||| |||| ||||| ||||| ||||| | |||||
Sbjct 301160 GACACGATCGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 301218
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||| ||||| || || || || | ||||| || ||||||||
Sbjct 301219 GCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 301278
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| | || || |||||
Sbjct 301279 TATCCAGAAGGAGTCGACTCTTCATCT 301305
Score = 113 bits (124), Expect = 5e-20
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || || || |||||||| || || ||||| | || ||||| | |
Sbjct 301375 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 301434
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||||| || |||| ||||| || || || || | |||||
Sbjct 301435 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 301494
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||||||||| ||||| || |||| |||||||| ||||||||
Sbjct 301495 GCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 301554
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| ||| || || ||
Sbjct 301555 TATCCAGAAGGAGAGCACCCTTCACCT 301581
>seq1
Length=3258266
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| || || ||||| ||||||||| | || ||||| | ||
Sbjct 2272493 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2272552
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||| | || || | || || ||||||||||| |||| ||
Sbjct 2272553 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2272612
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | |||||||| ||||| || || | || ||||| ||||||||||
Sbjct 2272613 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2272672
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | ||||| || || ||
Sbjct 2272673 ATCCAGAAGGAGTCGACGCTTCACCTTGT 2272701
Score = 111 bits (122), Expect = 2e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | |||||||| |||||||| | || || || | |
Sbjct 2271926 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2271985
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||||| || |||| ||||| ||||| ||||| | ||||||
Sbjct 2271986 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2272045
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || |||||||| || || | |||||| || ||| |||||
Sbjct 2272046 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2272105
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||||||||| | || || || ||
Sbjct 2272106 ATCCAGAAGGAGTCTACCCTTCACCT 2272131
Score = 102 bits (112), Expect = 8e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| || ||||| | || || || | |
Sbjct 2272721 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2272780
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| || |||| ||||| || |||||||| ||||||||
Sbjct 2272781 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2272840
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || || | |||||||| || |||| |||| ||||| || || ||||||
Sbjct 2272841 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2272900
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895
|| ||||| ||| ||| || |||||
Sbjct 2272901 ATTCAGAAAGAGAGCACCCTCCATCT 2272926
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || |||||||| || | ||||| || || ||||| |||| ||||| | |
Sbjct 2272208 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2272267
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| || |||| ||||| || || || || | |||||
Sbjct 2272268 GACACTATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2272326
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| | |||| ||| || || ||| |||| || | ||| || ||| ||| |||||
Sbjct 2272327 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2272386
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895
|| ||||| ||| | || |||| ||
Sbjct 2272387 TATTCAGAAAGAGTCTACTTTGCACCT 2272413
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854
|||||| | || ||||| || ||||||| ||| ||||| ||||| || || | || ||
Sbjct 638402 ATCCCCCCTGATCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGGACA 638343
Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | |||||||||||||||||||||| | || || || || ||
Sbjct 638342 CTGAGCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGT 638299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219109836640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |