Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 253 2e-62 seq6 138 1e-27 seq1 116 4e-21 >seq3 Length=3164952 Score = 253 bits (280), Expect = 2e-62 Identities = 402/572 (70%), Gaps = 11/572 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||| || || ||||| |||||||| | ||| ||| |||||||| Sbjct 1890712 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1890653 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 || || || | | | ||||||| | ||| | |||||||| ||||| || || || Sbjct 1890652 TCAAAAGATCTCCA-CGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTC 1890594 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| || || || ||||| |||||| || ||||||||||||||||| || || ||||| Sbjct 1890593 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1890534 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | | ||||| |||| ||| |||||||| ||||||||||| || || || || Sbjct 1890533 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1890474 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTC 116928 ||| || | ||| || | || || || ||||| || ||| | | | || Sbjct 1890473 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA 1890414 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | || || | || | || | ||||| || || || |||||| |||||| Sbjct 1890413 GCAACGCGAGTACC---TTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1890357 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| || ||||||||| ||| | || | || | ||||| | || || Sbjct 1890356 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1890297 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 |||||| || || |||||| | ||||| || || ||||||| | || || ||| | || Sbjct 1890296 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1890237 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 ||| || ||||||||||| || || || ||| ||| || |||||| | |||||||| Sbjct 1890236 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1890177 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| |||||| || || |||||||||| Sbjct 1890176 AATGCATACCGACTTCGCATGCTTGCTGTTCA 1890145 Score = 221 bits (244), Expect = 1e-52 Identities = 395/573 (69%), Gaps = 13/573 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || ||| |||| ||||| ||||| ||| ||| | || || Sbjct 1891922 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1891981 Query 116696 TCCAAGGACACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||| || | ||||||| || | |||| |||||||| ||||||||||| Sbjct 1891982 TCCAAAGATATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCA 1892041 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG- 116811 | || ||||| ||||| ||||| |||||| || ||||||||||||||||| ||||| Sbjct 1892042 TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGG 1892101 Query 116812 -TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||||| | || || || | || || | || || || || || ||||| ||| | Sbjct 1892102 TTTTCGAGC--GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGA 1892159 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCT---T 116927 |||| ||| | |||||||||| || || ||||||||| || ||| | |||| | Sbjct 1892160 TGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACAT---CTCTGACT 1892216 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || || || | || || | |||||||| || || |||||||| ||||| Sbjct 1892217 CTCAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGA 1892276 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||||||||| || | |||||| | | | | | | | || | | | | |||||| Sbjct 1892277 CCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTGG 1892336 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | |||||||| || || || ||||||| || || ||| || | || || ||||| | Sbjct 1892337 CGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGA 1892396 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||||||| || |||||||| || | || || ||||| || || ||||||| | Sbjct 1892397 AGAAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAG 1892456 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 | ||||| || ||||||||| | |||||| Sbjct 1892457 GGATGCATACAGATTTTGCCTGTCTCTTGTTCA 1892489 >seq6 Length=2247897 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||||||||| || || || |||| ||||| | | Sbjct 300872 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300931 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || || |||||||| ||| ||||||| Sbjct 300932 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300990 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| ||||| || |||||| || Sbjct 300991 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 301050 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| ||||||| || Sbjct 301051 CATTCAGAAGGAGTCCACCTTGCATCTCGT 301080 Score = 131 bits (144), Expect = 2e-25 Identities = 165/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || || |||||| |||| || || | | Sbjct 300303 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 300362 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| || || |||||| | ||||| Sbjct 300363 GACACCATCGATAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCA 300421 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| || Sbjct 300422 GCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAA 300481 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||||||||||| | || || ||||| | |||| |||||| Sbjct 300482 CATCCAGAAGGAGTCGACCCTTCATCT--CGGTGCGTTTGAGG 300522 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || || || ||||| |||| || || | | Sbjct 300590 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 300649 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 300650 GACACGATCGATAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 300708 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||||||||| ||||| || |||| |||||||| ||||| || Sbjct 300709 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 300768 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||||||| | || || ||| Sbjct 300769 CATTCAGAAGGAGTCGACCCTCCAT 300793 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 301100 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 301159 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||| |||| ||||| ||||| ||||| | ||||| Sbjct 301160 GACACGATCGACAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 301218 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| || || || || | ||||| || |||||||| Sbjct 301219 GCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 301278 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| | || || ||||| Sbjct 301279 TATCCAGAAGGAGTCGACTCTTCATCT 301305 Score = 113 bits (124), Expect = 5e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || |||||||| || || ||||| | || ||||| | | Sbjct 301375 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 301434 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||||| || |||| ||||| || || || || | ||||| Sbjct 301435 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 301494 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||||||||| ||||| || |||| |||||||| |||||||| Sbjct 301495 GCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 301554 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| ||| || || || Sbjct 301555 TATCCAGAAGGAGAGCACCCTTCACCT 301581 >seq1 Length=3258266 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || ||||| | || Sbjct 2272493 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2272552 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | || || | || || ||||||||||| |||| || Sbjct 2272553 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2272612 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | |||||||| ||||| || || | || ||||| |||||||||| Sbjct 2272613 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2272672 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | ||||| || || || Sbjct 2272673 ATCCAGAAGGAGTCGACGCTTCACCTTGT 2272701 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| |||||||| | || || || | | Sbjct 2271926 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2271985 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 2271986 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2272045 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || |||||||| || || | |||||| || ||| ||||| Sbjct 2272046 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2272105 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||||||||| | || || || || Sbjct 2272106 ATCCAGAAGGAGTCTACCCTTCACCT 2272131 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || ||||| | || || || | | Sbjct 2272721 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2272780 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| || |||||||| |||||||| Sbjct 2272781 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2272840 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | |||||||| || |||| |||| ||||| || || |||||| Sbjct 2272841 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2272900 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||| ||| ||| || ||||| Sbjct 2272901 ATTCAGAAAGAGAGCACCCTCCATCT 2272926 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || | ||||| || || ||||| |||| ||||| | | Sbjct 2272208 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2272267 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||| || || || || | ||||| Sbjct 2272268 GACACTATTGACAACG-TGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2272326 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || ||| |||| || | ||| || ||| ||| ||||| Sbjct 2272327 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2272386 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCT 40895 || ||||| ||| | || |||| || Sbjct 2272387 TATTCAGAAAGAGTCTACTTTGCACCT 2272413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 |||||| | || ||||| || ||||||| ||| ||||| ||||| || || | || || Sbjct 638402 ATCCCCCCTGATCAGCAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGGACA 638343 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | |||||||||||||||||||||| | || || || || || Sbjct 638342 CTGAGCGACTACAACATCCAGAAGGAGTCGACTCTTCACCTGGT 638299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219109836640