Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-24
seq1 111 2e-19
>seq6
Length=2247897
Score = 127 bits (140), Expect = 2e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || |||||||| |||| ||| || || |||| || |||||||| ||
Sbjct 301572 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 301513
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105
||||| ||||| ||||||||||||| || | | ||||||||| ||| | || | ||
Sbjct 301512 GCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTT 301454
Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165
|| | | | |||||| || || || || | |||||| || || ||||| || ||
Sbjct 301453 GACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGT 301394
Query 43166 CTTTACAAAGATTTGCATT 43184
||| |||||||| ||||||
Sbjct 301393 CTTGACAAAGATCTGCATT 301375
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || |||||||| || | ||||| || | || || || ||||| ||||||||
Sbjct 301291 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 301232
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | ||| | | |||||||||| ||| | |||| | |||
Sbjct 301231 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAATCTTTGCCTTCACGT 301173
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| ||| || || |||| |||||| || ||||| || || ||||| |
Sbjct 301172 TGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGA 301113
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 301112 CGAAGATCTGCAT 301100
Score = 105 bits (116), Expect = 8e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 42976 CCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTA 43035
||||||| | || |||||| ||||| || || |||| || || || |||| || |
Sbjct 300797 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300738
Query 43036 GCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGA 43095
||||||| || ||||| || | ||||||||||| | || | || |||||||||| ||
Sbjct 300737 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300678
Query 43096 TTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGC 43155
| || |||| | | | |||||| || ||||| |||| |||||| || || |
Sbjct 300677 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300618
Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || | |||||| || ||||| |||||
Sbjct 300617 CAGTCAACGTCTTCACGAAGATCTGCAT 300590
Score = 102 bits (112), Expect = 9e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| | || ||| | || | |||||| ||| |||||| ||||| || || || |
Sbjct 301098 CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAA 301039
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || |||| || |||||||| || ||||| || | ||||||||||| | ||
Sbjct 301038 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 300979
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135
| || |||||| | | ||| | || | || | | | | |||||| || || ||
Sbjct 300978 ATGCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGAC 300920
Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| ||| || || |||||||| || ||||| || || ||||||||
Sbjct 300919 CTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300872
>seq1
Length=3258266
Score = 111 bits (122), Expect = 2e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || ||||||||||| | || || ||| | || || ||||| |||||||||||
Sbjct 2272117 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2272058
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || ||||||||||||| || | | |||||||||| ||| | || | ||||
Sbjct 2272057 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACAT 2271999
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| || ||||| || | |||||||| |||||||| | ||||| |
Sbjct 2271998 TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGA 2271939
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 2271938 CGAAGATCTGCAT 2271926
Score = 93.3 bits (102), Expect = 5e-14
Identities = 150/212 (71%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 42974 CACCAAA-TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCAT 43032
|||||| ||||| || ||| || |||||||||||||| | ||||| ||| | || |
Sbjct 2272418 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2272359
Query 43033 CTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCA 43092
| | |||||| |||||||| || | || |||||||||| || | | |||||||||
Sbjct 2272358 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 2272300
Query 43093 TGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151
||| | || | | ||| | | | ||||| || || || |||| ||||| ||
Sbjct 2272299 TGAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTC 2272240
Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| | |||||||| || || |||||
Sbjct 2272239 TTCCCCGTCAAAGTCTTTACGAAAATCTGCAT 2272208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817499931920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |