Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq6 125 5e-24
seq1 120 2e-22
>seq6
Length=2247897
Score = 125 bits (138), Expect = 5e-24
Identities = 155/211 (73%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 34180 CACCA-GGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238
||||| |||| | || || || ||||| || |||||||| ||||| || |||| |
Sbjct 301586 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 301527
Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298
| | ||||||||| ||||||||||| |||||||||||| || | | ||||||||
Sbjct 301526 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 301467
Query 34299 CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTT 34358
||||| ||| | || | | |||| || | || ||||| |||| |||||| || |
Sbjct 301466 GAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCT 301407
Query 34359 TGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || ||||| || || ||||||||||||||
Sbjct 301406 TACCCGTGAGGGTCTTGACAAAGATCTGCAT 301376
Score = 105 bits (116), Expect = 4e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| || |||||||| || || || | || || | |||||||| ||||||
Sbjct 301290 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAAA 301231
Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||||| ||||||||||| | |||| | | ||||||||| |||||| ||| | |
Sbjct 301230 ATGAGGCGCTGCTGGTCAGGCGGG-ATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTT 301172
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| | |||| || | ||| ||||| || | |||||| || ||||| || || || || ||
Sbjct 301171 GTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGAC 301112
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 301111 GAAGATCTGCAT 301100
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||| ||||| || || ||| |||| || | ||||||||| |||||
Sbjct 300780 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 300721
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| | ||||||||||| ||| | || ||||||||| ||||| ||| | |
Sbjct 300720 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 300661
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| |||| || | || || || || | |||||| || || || || | || |||||
Sbjct 300660 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 300601
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 300600 AAGATCTGCAT 300590
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||| |||||||| || ||| |||| || | ||||||||| |||||
Sbjct 301062 TCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 301003
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| | ||||||||||| ||| | || |||||| || ||||| ||| | |
Sbjct 301002 ATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTA 300943
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| |||| || | || ||||| || | ||| || || ||||| ||||| || || ||
Sbjct 300942 TCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACG 300883
Query 34379 AAGATCTGCAT 34389
|| || |||||
Sbjct 300882 AAAATTTGCAT 300872
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| ||||| ||||| ||||| || || ||| |||| || | ||||||||| |||||
Sbjct 300493 TCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 300434
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
|| | |||||||||||| ||| | | |||||||| ||||| ||| | |
Sbjct 300433 ATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTA 300374
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | || | || || || || | ||||| || || || ||||| || |||||
Sbjct 300373 TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACG 300314
Query 34379 AAGATCTGCAT 34389
|||||||||||
Sbjct 300313 AAGATCTGCAT 300303
>seq1
Length=3258266
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|||||||| || | || || ||||| | || || ||||| ||||||||||||||
Sbjct 2272719 CCGCCGCGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2272660
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || || | ||||||||| || ||||| || ||||| || || ||
Sbjct 2272659 AGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGG 2272600
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || |||||| || ||||| ||||| | || | || | |||| ||| |||||
Sbjct 2272599 ATGCCCTCCTTATCCTGGATCTTC-GCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2272541
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||| ||||| || || ||||||||||||||||||||
Sbjct 2272540 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2272493
Score = 109 bits (120), Expect = 4e-19
Identities = 151/209 (72%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 34182 CCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCA 34241
|||| || | || || |||||||| |||||||| || || || || |||| ||||
Sbjct 2272928 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2272869
Query 34242 ACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCT 34300
| |||||||| || ||||| || || |||||||| | |||| | || ||||||||
Sbjct 2272868 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGG-ATGCCTTCCTTGTCTTGA 2272810
Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360
||||| ||| | || | |||| || | || || || |||| |||||| || |||
Sbjct 2272809 ATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTG 2272750
Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| || || || |||||||||||
Sbjct 2272749 CCTGTGAGGGTCTTGACGAAGATCTGCAT 2272721
Score = 84.2 bits (92), Expect = 1e-11
Identities = 146/211 (69%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 34180 CACCA-GGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238
||||| |||| |||||| |||||||| || ||||| ||||| || || | || |
Sbjct 2272418 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2272359
Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298
|||||||||| || ||||| || | ||| ||||||||| || | | ||||||||
Sbjct 2272358 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 2272299
Query 34299 CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTT 34358
||||| ||| | | | | || | || | || ||||| || | ||||| || |
Sbjct 2272298 GAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCT 2272239
Query 34359 TGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || || | ||| || || || ||||||||
Sbjct 2272238 TCCCCGTCAAAGTCTTTACGAAAATCTGCAT 2272208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071944875840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |