Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 7e-15 >seq5 Length=2330625 Score = 96.9 bits (106), Expect = 7e-15 Identities = 185/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| |||||| ||| ||||| || || || || || ||||| ||| || Sbjct 511510 CTTTGGTTTCAAGACGTTGGAGCGCTCTTACCTTCTTCGGATCAATGGCCGTGTCGCAGA 511569 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 ||| ||||||||| | ||||| || |||||||| |||||| | ||| | || | Sbjct 511570 ACGTCCACAGCACATGATCATGCGCGTAGCTGTCGGCATTCACGGCGCTGATGTCGATCG 511629 Query 248946 CGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 || | || || |||| | ||| ||||| | | || || ||| |||| || || Sbjct 511630 CGCTATTGAAACCTACAACCTGATGTCCGAACGTTACTTCACTCACGCCTCACCAACACT 511689 Query 249006 CTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGA 249065 ||||||||| ||||| ||| ||| |||||||||| || || || |||| |||| Sbjct 511690 CTTCAACGCGGGTACACCCAATCCTCAATTGAGCTCGTGTTTCCTGGTTTGCATGAAAGA 511749 Query 249066 CGACTCTGTCGACGGCATTTATGACACGCTTAA 249098 ||||| | || || || ||||| || || || Sbjct 511750 TGACTCCATTGAGGGAATCTATGAAACTCTCAA 511782 Score = 96.9 bits (106), Expect = 7e-15 Identities = 185/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| |||||| ||| ||||| || || || || || ||||| ||| || Sbjct 512107 CTTTGGTTTCAAGACGTTGGAGCGCTCTTACCTTCTTCGGATCAATGGCCGTGTCGCAGA 512166 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 ||| ||||||||| | ||||| || |||||||| |||||| | ||| | || | Sbjct 512167 ACGTCCACAGCACATGATCATGCGCGTAGCTGTCGGCATTCACGGCGCTGATGTCGATCG 512226 Query 248946 CGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCT 249005 || | || || |||| | ||| ||||| | | || || ||| |||| || || Sbjct 512227 CGCTATTGAAACCTACAACCTGATGTCCGAACGTTACTTCACTCACGCCTCACCAACACT 512286 Query 249006 CTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGA 249065 ||||||||| ||||| ||| ||| |||||||||| || || || |||| |||| Sbjct 512287 CTTCAACGCGGGTACACCCAATCCTCAATTGAGCTCGTGTTTCCTGGTTTGCATGAAAGA 512346 Query 249066 CGACTCTGTCGACGGCATTTATGACACGCTTAA 249098 ||||| | || || || ||||| || || || Sbjct 512347 TGACTCCATTGAGGGAATCTATGAAACTCTCAA 512379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766207393152