Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 6e-33
>seq3
Length=3164952
Score = 156 bits (172), Expect = 6e-33
Identities = 376/567 (66%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208
|||| ||| |||||||| ||| || | |||||||| | ||| || | ||| |||||
Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206
Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268
|| |||||||| ||||| ||||||||||| || | ||| || || || || || || ||
Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266
Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325
|| |||||||| || || || || || ||||| | | || ||| || | || |
Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1890326
Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385
| || ||||| | | ||||| || |||||| |||| ||||| || || |||||
Sbjct 1890327 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1890386
Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445
| ||||| || || || | || ||| || || | || ||||| || | |||
Sbjct 1890387 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1890446
Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505
|| | || || || ||||| || ||||| || |||||||| || | |||
Sbjct 1890447 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1890506
Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565
|| | ||| || || | | || || || | | || || || || || || |||
Sbjct 1890507 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1890566
Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA----G 36621
||| ||||||||||| | ||||| | ||| | || ||| |||| |
Sbjct 1890567 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTC-ATTGTCGTTAAGGCG 1890625
Query 36622 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 36681
|||||||| || | || |||||| || | |||| ||||| | ||||| || || ||
Sbjct 1890626 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1890685
Query 36682 CTCTGCCTTTTTATACATATTCCAGAT 36708
|| || ||||| ||||| | ||||||
Sbjct 1890686 TTCAGCTTTTTTGTACATTTGCCAGAT 1890712
Score = 147 bits (162), Expect = 3e-30
Identities = 357/537 (66%), Gaps = 8/537 (1%)
Strand=Plus/Minus
Query 36179 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 36238
|| ||||| | |||||| | |||||| ||||| || | || ||||| || || || ||
Sbjct 1892457 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1892398
Query 36239 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 36298
|| ||||| || || || ||||| ||||| || ||||| || |||||||| ||||| ||
Sbjct 1892397 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAAC 1892338
Query 36299 GCAATAAGTCTCTCTCCATAAC--CGGCACT--GTCATGTATCCACTTTTGAGCCCAATC 36354
|| | | ||| || ||| || | | |||| |||||| | | ||||| ||
Sbjct 1892337 GCCACCAACCTCGTGGCA-AACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTC 1892279
Query 36355 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATT 36414
|| ||||| || || || || || ||||| || | ||| ||||| | | |
Sbjct 1892278 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTG 1892219
Query 36415 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 36474
| || | || ||||| || | ||| || ||||||| ||||||||||| ||
Sbjct 1892218 AGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1892159
Query 36475 GGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 36534
||||||||||| || ||||| | | || | |||||||| | |||| ||
Sbjct 1892158 CATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1892099
Query 36535 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 36594
|| | | ||| || || || || ||||| || |||||||| |||| |||| |
Sbjct 1892098 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGA 1892039
Query 36595 TATAAAATATTTTTCGTTTGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATAT 36651
||| |||| |||||| | || ||| ||||| || ||||||||| || ||
Sbjct 1892038 TATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTGGACAT 1891979
Query 36652 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708
||| | ||||| |||||||| || |||| || || || ||||| | ||| ||
Sbjct 1891978 ATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1891922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172684819760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |