Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 8e-17
seq6 86.0 6e-12
seq8 84.2 2e-11
>seq1
Length=3258266
Score = 102 bits (112), Expect = 8e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||||| |||||||| || || || || |||||| | |||| | || || |||||
Sbjct 2272129 GTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTG 2272070
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||||||||| |||| ||||| ||||| |||||||| || || || ||||| ||| | |
Sbjct 2272069 TTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTC-CTGAATCT 2272011
Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| | || | | || | ||||| | | |||||| |||| || | |||||||| |
Sbjct 2272010 TCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCG 2271951
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
|||| || || ||||| || |||||
Sbjct 2271950 TCAATGTCTTGACGAAGATCTGCAT 2271926
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
||||||||||| ||||| || |||||| | || | | || || | ||| || |||
Sbjct 2272404 GTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2272345
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686
|| |||||| |||||||| |||||||| || ||||| ||||| ||| | || | ||
Sbjct 2272344 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTC-CTGAATCTTCGCCTT 2272286
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | ||||| | | ||| ||||| | || | |||||| || ||||| ||
Sbjct 2272285 CACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGT 2272226
Query 139747 TTTTACGAATATTTGCAT 139764
|||||||| || |||||
Sbjct 2272225 CTTTACGAAAATCTGCAT 2272208
>seq6
Length=2247897
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || ||||||||||| || | |||| ||| |||||||| || ||
Sbjct 300786 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 300727
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||||| || ||||| || || || ||||| || ||||| ||| || ||
Sbjct 300726 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 300667
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| | | ||||||||| | || | |||||| || ||||||||
Sbjct 300666 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 300607
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 300606 TTCACGAAGATCTGCAT 300590
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || |||| ||| | || | || | || ||||| || ||||||||||| |||
Sbjct 301099 GCCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGA 301040
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| |||| |||||||||||| || || || |||||| || ||||| || || ||
Sbjct 301039 AAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGG 300980
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
||||| || || || ||| | || | || | | || | ||||| | | ||| |
Sbjct 300979 AATGCCCTCCTTATC-TTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGA 300921
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| | || | ||||||||| || | || || ||||| |||||||||
Sbjct 300920 CCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCATA 300871
>seq8
Length=1872454
Score = 84.2 bits (92), Expect = 2e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|||||||| ||||| |||||||||||||| | |||| |||||||||||| || ||
Sbjct 434468 GTAGACTCCTTTTGGATGTTATAATCGCTGAGGGTGCGACCGTCTTCGAGCTGCTTTCCG 434527
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGC 139661
||| | ||||| || ||||| ||||| || ||||
Sbjct 434528 GCAAAAATCAGGCGCTGCTGGTCGGGTGGGATGC 434561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063913188800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |