Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-38 >seq3 Length=3164952 Score = 174 bits (192), Expect = 2e-38 Identities = 380/567 (67%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| ||| |||||||| ||| |||| |||||||| | ||| || ||||| ||||| Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--- 50127 || ||||| || || || || ||||| ||||| || | || ||| || | ||| | Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1890326 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | || ||||| | | ||||| || |||||| |||| ||||| || || || || Sbjct 1890327 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1890386 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 | |||| || || || | || ||| || || | ||||||||||| | ||| Sbjct 1890387 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1890446 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1890447 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1890506 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | ||| || || | | || || ||| | | || || || || || || ||| Sbjct 1890507 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1890566 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA----G 50423 ||| ||||||||||| | ||||| | ||| || || || | |||| | Sbjct 1890567 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATT-GTCGTTAAGGCG 1890625 Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483 |||||||| || | || |||||| || | || | ||||| | ||||| || || || Sbjct 1890626 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1890685 Query 50484 CTCTGCCTTTTTATACATATTCCAGAT 50510 || || ||||| ||||| | |||||| Sbjct 1890686 TTCAGCTTTTTTGTACATTTGCCAGAT 1890712 Score = 156 bits (172), Expect = 6e-33 Identities = 376/566 (66%), Gaps = 6/566 (1%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| | ||| || ||||| |||| || ||||| | |||||| |||||||| ||| Sbjct 1892487 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1892428 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | || ||||| || || || || || ||||| || || || ||||| || || Sbjct 1892427 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1892368 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CGC 50128 || |||||||| |||||||| || || || || || | ||| || | | | || Sbjct 1892367 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT 1892308 Query 50129 TG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 || ||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1892307 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1892248 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || | ||| ||||| | | | | || | || |||||||| | ||| Sbjct 1892247 ATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGA 1892188 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||||| ||||||||||| || || |||||||| || ||||| | | Sbjct 1892187 GAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACT 1892128 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || | || ||||| | |||| || || | | ||| || || || || ||||| Sbjct 1892127 TCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCG 1892068 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 || |||||||| |||| |||| | ||| ||||| ||||||| | || ||| Sbjct 1892067 GAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTA 1892008 Query 50428 ---TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 ||||| || ||||||||| || ||||| | ||||| |||||||| || ||| Sbjct 1892007 TCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCC 1891948 Query 50485 TCTGCCTTTTTATACATATTCCAGAT 50510 | || || || ||||| | ||| || Sbjct 1891947 TGGGCTTTCTTGTACATCTGCCAAAT 1891922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268674302960