Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq3 174 2e-38
>seq3
Length=3164952
Score = 174 bits (192), Expect = 2e-38
Identities = 380/567 (67%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| ||| |||||||| ||| |||| |||||||| | ||| || ||||| |||||
Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| |||||||| ||||| ||||||||||| || | ||| || || || || || || ||
Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG--- 50127
|| ||||| || || || || ||||| ||||| || | || ||| || | ||| |
Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1890326
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
| || ||||| | | ||||| || |||||| |||| ||||| || || || ||
Sbjct 1890327 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1890386
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247
| |||| || || || | || ||| || || | ||||||||||| | |||
Sbjct 1890387 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1890446
Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307
|| | || || || ||||| || || || || |||||||| || | |||
Sbjct 1890447 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1890506
Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367
|| | ||| || || | | || || ||| | | || || || || || || |||
Sbjct 1890507 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1890566
Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA----G 50423
||| ||||||||||| | ||||| | ||| || || || | |||| |
Sbjct 1890567 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATT-GTCGTTAAGGCG 1890625
Query 50424 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 50483
|||||||| || | || |||||| || | || | ||||| | ||||| || || ||
Sbjct 1890626 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1890685
Query 50484 CTCTGCCTTTTTATACATATTCCAGAT 50510
|| || ||||| ||||| | ||||||
Sbjct 1890686 TTCAGCTTTTTTGTACATTTGCCAGAT 1890712
Score = 156 bits (172), Expect = 6e-33
Identities = 376/566 (66%), Gaps = 6/566 (1%)
Strand=Plus/Minus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| | ||| || ||||| |||| || ||||| | |||||| |||||||| |||
Sbjct 1892487 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1892428
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || | || ||||| || || || || || ||||| || || || ||||| || ||
Sbjct 1892427 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1892368
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG--CGC 50128
|| |||||||| |||||||| || || || || || | ||| || | | | ||
Sbjct 1892367 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT 1892308
Query 50129 TG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
|| ||| |||||| | | ||||| |||| ||||| || || || || || || ||
Sbjct 1892307 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1892248
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247
|| | ||| ||||| | | | | || | || |||||||| | |||
Sbjct 1892247 ATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGA 1892188
Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307
|| ||||||| ||||||||||| || || |||||||| || ||||| | |
Sbjct 1892187 GAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACT 1892128
Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367
|| | || ||||| | |||| || || | | ||| || || || || |||||
Sbjct 1892127 TCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCG 1892068
Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427
|| |||||||| |||| |||| | ||| ||||| ||||||| | || |||
Sbjct 1892067 GAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTA 1892008
Query 50428 ---TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484
||||| || ||||||||| || ||||| | ||||| |||||||| || |||
Sbjct 1892007 TCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCC 1891948
Query 50485 TCTGCCTTTTTATACATATTCCAGAT 50510
| || || || ||||| | ||| ||
Sbjct 1891947 TGGGCTTTCTTGTACATCTGCCAAAT 1891922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268674302960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |