Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 150 2e-31 >seq3 Length=3164952 Score = 150 bits (166), Expect = 2e-31 Identities = 375/567 (66%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| ||| |||||||| ||| |||| ||||| || | ||| || | ||| ||||| Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || |||||||| ||||| ||||||||||| || | ||| || || || || || || || Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || ||||| || || || || || || ||||| | | || ||| || | || | Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1890326 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || ||||| | | ||||| || |||||| |||| ||||| || || || || Sbjct 1890327 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1890386 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 | |||| || || || | || ||| || || | || |||||||| | ||| Sbjct 1890387 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1890446 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || | || || || ||||| || || || || |||||||| || | ||| Sbjct 1890447 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1890506 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 || | |||| || || | | || || ||| | | || ||||| || || || ||| Sbjct 1890507 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1890566 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---- 42528 ||| ||||||||||| | ||||| | ||| | || | | ||||| Sbjct 1890567 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1890625 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 |||||||| || | || |||||| || | || | ||||| | ||||| || || || Sbjct 1890626 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1890685 Query 42589 TTCTGCCTTTTTATACATATTCCAGAT 42615 ||| || ||||| ||||| | |||||| Sbjct 1890686 TTCAGCTTTTTTGTACATTTGCCAGAT 1890712 Score = 147 bits (162), Expect = 3e-30 Identities = 378/571 (66%), Gaps = 16/571 (3%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| | ||| || ||||| |||| || || || | |||||| | |||||| ||| Sbjct 1892487 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1892428 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || | || ||||| || || || || || ||||| || || || ||||| ||||| Sbjct 1892427 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1892368 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCAC 42233 || |||||||| |||||||| ||||| || || | | ||| || ||| || | Sbjct 1892367 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCA-AACGTCGACCG 1892309 Query 42234 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 | |||| |||||| | | ||||| |||| ||||| || || || || || || || Sbjct 1892308 TTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTC 1892249 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || | ||| ||||| | | | | || | || |||||||| | || Sbjct 1892248 GATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAG 1892189 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | || |||| || ||||||||||| || || |||||||| || ||||| | | | Sbjct 1892188 AGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGAC 1892129 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || | | |||||||| | |||| || || | | ||| ||||| || || ||||| Sbjct 1892128 TTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTC 1892069 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT-- 42529 || |||||||| |||| |||| | ||| ||| | ||| || ||| | | Sbjct 1892068 GGAAGCGGCAAAAAATGCCAGGACATATGATATGAAA----TGGCGTTCGTTGTCATTCA 1892013 Query 42530 --TTA---TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 ||| ||||| || ||||||||| || ||||| | ||||| ||||||||| | Sbjct 1892012 GGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACG 1891953 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGAT 42615 | || | || || || ||||| | ||| || Sbjct 1891952 AAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1891922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139082550640