Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 125 1e-23 >seq3 Length=3164952 Score = 125 bits (138), Expect = 1e-23 Identities = 339/510 (66%), Gaps = 14/510 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| ||||||||||||| ||| | || || || ||||| | ||||||| | || ||| Sbjct 1890712 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1890653 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || || || || |||| ||| | | || | | || | |||||| | ||| | ||| Sbjct 1890652 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTTGTCTCG 1890593 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 || | | || || ||||||| ||| ||||| ||||||||||| || | |||||| || Sbjct 1890592 CATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGA-GCG 1890534 Query 125198 ATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||||| | ||| | || | | |||| | ||||| ||||| |||||||| ||| Sbjct 1890533 CTTCTCGAACGAG--GTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATG 1890476 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || || || | ||| || | ||||| || || || | ||||| || || Sbjct 1890475 ATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCT 1890416 Query 125315 --GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAG 125372 |||||| | || || || | || | || || | || | | | | ||| Sbjct 1890415 AAGCAACGCGAGTAC---CTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAG 1890359 Query 125373 GCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGTACGCCGACAGACTGGT 125431 || | |||| | || |||||| || || | || | | || || || | || Sbjct 1890358 GCGGACTGGGCACTACGCTGGATCTCCGATCGTC-GCTCCACATTTGCTGAGCGATTAGT 1890300 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || |||||||| || |||||||| ||||| || ||| ||| || | ||||| ||| | Sbjct 1890299 CGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTT 1890240 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||||| || |||||||| ||||| || Sbjct 1890239 GAAGAAGCGTGGCCTCATGCCTGGACTCAC 1890210 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 125698 TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTAC 125757 ||||||||||||| |||||| |||||| ||||||| |||||||| ||||| ||||| | Sbjct 1889989 TGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTGC 1889930 Query 125758 TGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCA 125817 | | | |||| ||| |||||||| | || ||||| || || ||| || Sbjct 1889929 TCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGACA 1889870 Query 125818 GCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || | |||| ||||||||||| || |||||| Sbjct 1889869 TGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAG 1889832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059070314640