Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
>seq1
Length=3258266
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| |||||||| |||||| | ||| |||| ||||| || ||||| || ||
Sbjct 2272399 CTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAA 2272340
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
||||||||||||||||| |||| | ||||| || || ||| || || || |
Sbjct 2272339 GATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTT 2272280
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
||| ||| || | | ||| || |||| || || || || || || |||||||| ||
Sbjct 2272279 GTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTAC 2272220
Query 44110 AAATATTTGCATG 44122
|| || ||||||
Sbjct 2272219 GAAAATCTGCATG 2272207
Score = 82.4 bits (90), Expect = 5e-11
Identities = 143/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 43914 CCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCA 43973
||| ||| || ||||||||||| ||||| || ||||| | | || | || ||||
Sbjct 2272928 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2272869
Query 43974 ATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAA 44033
|||| || || ||||| |||| |||||||||||| | || | ||||| || ||| ||
Sbjct 2272868 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2272809
Query 44034 TTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTAC 44093
| || || || || | | || || | | ||| || || | ||| ||||| || |
Sbjct 2272808 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGC 2272749
Query 44094 CGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || | ||||| || || || |||||
Sbjct 2272748 CTGTGAGGGTCTTGACGAAGATCTGCAT 2272721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354777539466072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |