Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 seq1 120 7e-22 seq3 111 4e-19 >seq6 Length=2247897 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| ||||| |||||||| || || | |||||| || || || || || || ||| Sbjct 301566 TCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAA 301507 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 301506 ATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTG 301447 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || || ||||| || || || |||||||| || || || || ||| Sbjct 301446 TCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTCTTGACA 301387 Query 104549 AATATCTGCATT 104560 || ||||||||| Sbjct 301386 AAGATCTGCATT 301375 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| ||||| ||||| || ||||| | || || || ||| Sbjct 301305 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 301246 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||| ||||| || | ||| || ||||| || || || || || ||||||||| Sbjct 301245 TGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 301186 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || || || || | || || | || ||||| || || || ||||| ||| Sbjct 301185 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCA 301126 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 301125 GTCAGGGTCTTGACGAAGATCTGCAT 301100 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | || || || ||||| || |||||||| || || || | ||||| || || Sbjct 300508 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 300449 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || || || || || | | ||| || || || || |||||||| || ||||||||| Sbjct 300448 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATC 300389 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | ||| || || || ||||| || || || ||||| ||| Sbjct 300388 TTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 300329 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || |||||||| Sbjct 300328 GTGAGGGTCTTCACGAAGATCTGCAT 300303 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | ||||| || || || || || Sbjct 300786 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 300727 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || ||||| || || || || || ||||| ||||| || || Sbjct 300726 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 300667 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || || || ||||| ||||| | || Sbjct 300666 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 300607 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 300606 TTCACGAAGATCTGCAT 300590 >seq1 Length=3258266 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 || || || ||||| |||||||||||||| || || || ||||||| || || || | Sbjct 2272413 AGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAAC 2272354 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || |||||||| || || | || || || || ||||| || ||||| || ||||||||| Sbjct 2272353 TGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATC 2272294 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || || || || | || || || || ||||| || || || ||||| || Sbjct 2272293 TTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCC 2272234 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | || ||||| || |||||||| Sbjct 2272233 GTCAAAGTCTTTACGAAAATCTGCAT 2272208 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 ||||||||||| || || || || || || | |||||| || | ||| || || |||||| Sbjct 2272911 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2272852 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || || || || || || ||||| || || |||||||| || || ||||| Sbjct 2272851 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2272792 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || |||||||| | || || ||||| || || || || || || Sbjct 2272791 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTGTGAGGGTCTTGACG 2272732 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2272731 AAGATCTGCAT 2272721 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| ||||| || || || || || | || || || || ||||| ||| Sbjct 2272122 GTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCA 2272063 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || ||||||||||| || || Sbjct 2272062 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 2272003 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || || || || || ||||| || || | ||| Sbjct 2272002 ACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTC 2271943 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2271942 TTGACGAAGATCTGCAT 2271926 >seq3 Length=3164952 Score = 111 bits (122), Expect = 4e-19 Identities = 365/557 (66%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 ||||||||| | || | || ||||| ||||||| ||||| | || ||||| | || Sbjct 1890703 ATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTGTCAAAAGAT 1890644 Query 268802 TTAATAGATTGGAAAAAT----TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCT 268857 | || ||||| || |||| || | || | ||| | || || | || Sbjct 1890643 CTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTCGCATGTCCT 1890585 Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 ||||||||||| | |||||| ||||| ||||| || || || ||| |||| | Sbjct 1890584 CGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGCTTCTCGAA 1890525 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 ||||| ||| |||| || | || || ||||| ||||| || || |||||||| Sbjct 1890524 CGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAATAT 1890465 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037 || |||| ||| || | || |||||||| || | || || | || | Sbjct 1890464 CCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA-GCAACGCG 1890406 Query 269038 AAGACTATTTTC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGC 269094 | || ||||| | || | |||| | || |||||| | || || | || ||||| Sbjct 1890405 AGTACC-TTTTCGATGCTGTTGAGACC-ATTCCCTGTGTCAAAAGGAAGGCGGACTGGGC 1890348 Query 269095 TCTGAAATGGATAAACGATAG-CGCGCC----TTACGGAGAAAGGTTAGTTGCTTTTGCC 269149 || ||||| |||| | ||| || || | ||| | ||||| || || ||| Sbjct 1890347 ACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGA--TTAGTCGCCTTCGCC 1890290 Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209 ||||| || || || ||||| || || ||||| ||| | ||||| ||||||||||| | Sbjct 1890289 GCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAAGCGT 1890230 Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269 ||||| ||||| ||| | || ||||| || ||| | || || | ||||| || | || Sbjct 1890229 GGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAATGCAT 1890170 Query 269270 TGCGACTTCGCTTGTTT 269286 ||||||||| || || Sbjct 1890169 ACCGACTTCGCATGCTT 1890153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398193467912