Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6 131 4e-25
seq1 120 7e-22
seq3 111 4e-19
>seq6
Length=2247897
Score = 131 bits (144), Expect = 4e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| ||||| |||||||| || || | |||||| || || || || || || |||
Sbjct 301566 TCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAA 301507
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | ||| || || ||||| || ||||| || ||||||||||| || || |||||
Sbjct 301506 ATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTGACATTG 301447
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || || || || ||||| || || || |||||||| || || || || |||
Sbjct 301446 TCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTCTTGACA 301387
Query 104549 AATATCTGCATT 104560
|| |||||||||
Sbjct 301386 AAGATCTGCATT 301375
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413
||||| | || || || ||||| ||||| ||||| || ||||| | || || || |||
Sbjct 301305 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 301246
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || ||||| ||||| || | ||| || ||||| || || || || || |||||||||
Sbjct 301245 TGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 301186
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
||||| || || || || | || || | || ||||| || || || ||||| |||
Sbjct 301185 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCA 301126
Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || ||||||||
Sbjct 301125 GTCAGGGTCTTGACGAAGATCTGCAT 301100
Score = 111 bits (122), Expect = 4e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413
||||| | || || || ||||| || |||||||| || || || | ||||| || ||
Sbjct 300508 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 300449
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| || || || || || | | ||| || || || || |||||||| || |||||||||
Sbjct 300448 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATC 300389
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|| || || || || || | ||| || || || ||||| || || || ||||| |||
Sbjct 300388 TTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 300329
Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || ||||||||
Sbjct 300328 GTGAGGGTCTTCACGAAGATCTGCAT 300303
Score = 95.1 bits (104), Expect = 3e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| ||||||||||| || || | ||||| || || || || ||
Sbjct 300786 GTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCC 300727
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || | | ||| || ||||| || || || || || ||||| ||||| || ||
Sbjct 300726 GCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 300667
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || | || ||||| || || || ||||| ||||| | ||
Sbjct 300666 ACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTC 300607
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 300606 TTCACGAAGATCTGCAT 300590
>seq1
Length=3258266
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413
|| || || ||||| |||||||||||||| || || || ||||||| || || || |
Sbjct 2272413 AGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAAC 2272354
Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473
|| |||||||| || || | || || || || ||||| || ||||| || |||||||||
Sbjct 2272353 TGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATC 2272294
Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533
|| || || || || || | || || || || ||||| || || || ||||| ||
Sbjct 2272293 TTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCC 2272234
Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559
|| | || ||||| || ||||||||
Sbjct 2272233 GTCAAAGTCTTTACGAAAATCTGCAT 2272208
Score = 105 bits (116), Expect = 2e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
||||||||||| || || || || || || | |||||| || | ||| || || ||||||
Sbjct 2272911 TCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCCGCAAAA 2272852
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | || || || || || || ||||| || || |||||||| || || |||||
Sbjct 2272851 ATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTCACATTA 2272792
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || || || |||||||| | || || ||||| || || || || || ||
Sbjct 2272791 TCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTGTGAGGGTCTTGACG 2272732
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 2272731 AAGATCTGCAT 2272721
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| ||||| || || || || || | || || || || ||||| |||
Sbjct 2272122 GTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCA 2272063
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || ||||| || || || || ||||||||||| || ||
Sbjct 2272062 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 2272003
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || || || || || || || || ||||| || || | |||
Sbjct 2272002 ACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTC 2271943
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 2271942 TTGACGAAGATCTGCAT 2271926
>seq3
Length=3164952
Score = 111 bits (122), Expect = 4e-19
Identities = 365/557 (66%), Gaps = 18/557 (3%)
Strand=Plus/Minus
Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801
||||||||| | || | || ||||| ||||||| ||||| | || ||||| | ||
Sbjct 1890703 ATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTGTCAAAAGAT 1890644
Query 268802 TTAATAGATTGGAAAAAT----TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCT 268857
| || ||||| || |||| || | || | ||| | || || | ||
Sbjct 1890643 CTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTCGCATGTCCT 1890585
Query 268858 TGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917
||||||||||| | |||||| ||||| ||||| || || || ||| |||| |
Sbjct 1890584 CGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGCTTCTCGAA 1890525
Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977
||||| ||| |||| || | || || ||||| ||||| || || ||||||||
Sbjct 1890524 CGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAATAT 1890465
Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037
|| |||| ||| || | || |||||||| || | || || | || |
Sbjct 1890464 CCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAA-GCAACGCG 1890406
Query 269038 AAGACTATTTTC--TTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGC 269094
| || ||||| | || | |||| | || |||||| | || || | || |||||
Sbjct 1890405 AGTACC-TTTTCGATGCTGTTGAGACC-ATTCCCTGTGTCAAAAGGAAGGCGGACTGGGC 1890348
Query 269095 TCTGAAATGGATAAACGATAG-CGCGCC----TTACGGAGAAAGGTTAGTTGCTTTTGCC 269149
|| ||||| |||| | ||| || || | ||| | ||||| || || |||
Sbjct 1890347 ACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGA--TTAGTCGCCTTCGCC 1890290
Query 269150 GCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGA 269209
||||| || || || ||||| || || ||||| ||| | ||||| ||||||||||| |
Sbjct 1890289 GCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAAGCGT 1890230
Query 269210 GGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACAC 269269
||||| ||||| ||| | || ||||| || ||| | || || | ||||| || | ||
Sbjct 1890229 GGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAATGCAT 1890170
Query 269270 TGCGACTTCGCTTGTTT 269286
||||||||| || ||
Sbjct 1890169 ACCGACTTCGCATGCTT 1890153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398193467912
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