Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq1 84.2 2e-11 >seq6 Length=2247897 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||||||||||| || || ||||| |||| || || ||||||| |||||| Sbjct 301578 TGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGC 301519 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || |||| | |||||||| || || | | |||||||||| ||| ||| Sbjct 301518 TTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTC 301459 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | |||||| ||| | || || || ||||| ||| Sbjct 301458 GCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTG 301399 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 301398 AGGGTCTTGACAAAGATCTGCAT 301376 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 |||||| || |||||| || ||||| || || | || || || ||||||| |||| Sbjct 300506 ATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGA-AAGGGTGCGGCCGTCCTCGAGCT 300448 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || ||||||||||| || || | | |||||||||| ||| | Sbjct 300447 GCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATCT 300388 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 || ||| | | ||||| || | ||||||| ||||| || || || || || | Sbjct 300387 TCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAG 300328 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || |||||||| Sbjct 300327 TGAGGGTCTTCACGAAGATCTGCAT 300303 >seq1 Length=3258266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || |||||||| || |||||||||||||| | || ||| || ||||||||| | Sbjct 2272924 ATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCG-AAAGTGTGCGACCGTCCTCCAATT 2272866 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || | |||| | || ||||| ||| ||| | | ||||||||| ||| | Sbjct 2272865 GCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCT 2272806 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 || ||| | | | || || || | |||||| ||| | || || || || || | Sbjct 2272805 TCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTG 2272746 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || || || |||||||| Sbjct 2272745 TGAGGGTCTTGACGAAGATCTGCAT 2272721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251128124014