Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq1 84.2 2e-11
>seq6
Length=2247897
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||||||||||| || || ||||| |||| || || ||||||| ||||||
Sbjct 301578 TGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGC 301519
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || || |||| | |||||||| || || | | |||||||||| ||| |||
Sbjct 301518 TTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTC 301459
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | || || || | |||||| ||| | || || || ||||| |||
Sbjct 301458 GCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTG 301399
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| || || ||||| ||||||||
Sbjct 301398 AGGGTCTTGACAAAGATCTGCAT 301376
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581
|||||| || |||||| || ||||| || || | || || || ||||||| ||||
Sbjct 300506 ATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGA-AAGGGTGCGGCCGTCCTCGAGCT 300448
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
|||| || || | || ||||||||||| || || | | |||||||||| ||| |
Sbjct 300447 GCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATCT 300388
Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
|| ||| | | ||||| || | ||||||| ||||| || || || || || |
Sbjct 300387 TCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAG 300328
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
|||| || ||||| || ||||||||
Sbjct 300327 TGAGGGTCTTCACGAAGATCTGCAT 300303
>seq1
Length=3258266
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581
||| || |||||||| || |||||||||||||| | || ||| || ||||||||| |
Sbjct 2272924 ATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCG-AAAGTGTGCGACCGTCCTCCAATT 2272866
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
|||| || | |||| | || ||||| ||| ||| | | ||||||||| ||| |
Sbjct 2272865 GCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCT 2272806
Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
|| ||| | | | || || || | |||||| ||| | || || || || || |
Sbjct 2272805 TCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTG 2272746
Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726
|||| || || || || ||||||||
Sbjct 2272745 TGAGGGTCTTGACGAAGATCTGCAT 2272721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251128124014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |