Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq6 87.8 2e-12 >seq1 Length=3258266 Score = 113 bits (124), Expect = 4e-20 Identities = 156/215 (73%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 94798 CACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG--AATC 94854 ||||||| ||||||||||| || || || | || |||||| | || ||| | ||| Sbjct 2272418 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCG--GAGAGAGTTCGCCCATC 2272361 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||||| ||| ||||| | ||||| || | |||||| || |||||||| ||||| ||||| Sbjct 2272360 CTCCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTC 2272301 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | ||| || ||||| ||| | | | |||||| | ||||| || | ||||| || Sbjct 2272300 CTGAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGT 2272241 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | ||| || || || |||||||||| Sbjct 2272240 CTTCCCCGTCAAAGTCTTTACGAAAATCTGCATGC 2272206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 94799 ACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | ||||| ||||| || | || |||||| | ||| |||||| Sbjct 2272135 ACCAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTC 2272076 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||||| || | ||||| | | ||||| || ||||| ||||| || ||||| | Sbjct 2272075 AAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG 2272016 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || |||||||| | ||| |||||| | || || |||| |||||||| || Sbjct 2272015 AATCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTT 2271956 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | || || || ||||||||||||| Sbjct 2271955 GCCCGTCAATGTCTTGACGAAGATCTGCATGC 2271924 >seq6 Length=2247897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || || || || | || || | | ||||| || || || ||||| || || Sbjct 301255 ATCCTCGAGTTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTT 301196 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||| ||| | ||| ||||||| ||||| || | |||||| Sbjct 301195 GTCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGAT 301136 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || || ||||||||||||| Sbjct 301135 CGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGC 301098 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94800 CCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | || || ||||| || | |||||| || | ||| | ||||| | Sbjct 300797 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300738 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || | ||||| || | ||||| || || || || || || ||||| | | Sbjct 300737 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300678 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||||||| ||| ||||||| || || || | |||||| || |||| Sbjct 300677 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300618 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| | || ||||| ||||||||||||| Sbjct 300617 CAGTCAACGTCTTCACGAAGATCTGCATGC 300588 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | || || | | ||||| || |||||||| ||||| ||| Sbjct 301530 TCCTCGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTG 301471 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | ||| ||||| | ||||| || | |||||| Sbjct 301470 TCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATT 301411 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||||||||| Sbjct 301410 GTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291121549040