Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq5 109 1e-18
>seq5
Length=2330625
Score = 109 bits (120), Expect = 1e-18
Identities = 158/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 363736 TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795
|||||| ||| || ||||| || ||||| | ||||||||||| || | || ||
Sbjct 514548 TACATTGCCGGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGT---AC 514604
Query 363796 AAT---ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATG 363852
||| ||||| | || ||||| || || || || | | || || || || ||
Sbjct 514605 AATGAGACTGCTCGCTATGTCGATCAAGGCGGTAACAAACTCCCGGGCGCTTTCGCAATC 514664
Query 363853 TATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGA 363912
||| | ||||| |||||||||| | |||||| |||| ||||| |||||| ||
Sbjct 514665 TATATTGAGCCATGGCATGCCGATACATATGAGTTCGTTGACCTCCGTAAAAACCACGGC 514724
Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGG 363954
|| |||||| | ||||||||||| || |||||||||||||||
Sbjct 514725 AAGGAGGAAGTTCGTGCACGTGACCTCTTCTATGCACTTTGG 514766
Score = 105 bits (116), Expect = 2e-17
Identities = 384/610 (63%), Gaps = 56/610 (9%)
Strand=Plus/Plus
Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459
|||||| ||||| || ||||| ||| |||||||| | | | ||||| || |||
Sbjct 512117 AAGACGTTGGAGCGCTCTTACCTTCTTCGGATCAATGGCCGTGTCGCAGAACGTCCACAG 512176
Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519
|| ||| | ||||| || ||| | || || || || | ||||| ||| ||| ||||||
Sbjct 512177 CACATGATCATGCGCGTAGCTGTCGGCATTCACGGCGCTGATGTCGATCGCGCTATTGAA 512236
Query 363520 ACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCT 363579
|| || || || | | ||| ||||| |||||| | |||||| | | ||| ||
Sbjct 512237 ACCTACAACCTGATGTCCGAACGTTACTTCACTCACGCCTCACCAACACTCTTCAACGCG 512296
Query 363580 GGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATC 363639
|| || | ||||| || || || || || || | ||||| || || |||||
Sbjct 512297 GGTACACCCAATCCTCAATTGAGCTCGTGTTTCCTGGTTTGCATGAAAGATGACTCCATT 512356
Query 363640 GAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATT 363699
||||| |||| ||| || || ||||| ||||| | || ||||| || || || |||
Sbjct 512357 GAGGGAATCTATGAAACTCTCAAGAACTGTGCCATGATCAGCAAGACGGCTGGTGGCATT 512416
Query 363700 GGTGTATCGATCCACAATGTTCGTGC-ACAGA---------------------------- 363730
|| | |||||||| | || || ||||
Sbjct 512417 GGACTCAATATCCACAACATCCGGGCTACAGGGTACGTCTTGCAATTGATTCCGTCTTCA 512476
Query 363731 -------------ACAGTTACATTCGCGGC-ACAGGG-----------GGATACTCGAAT 363765
|||||| | || ||| | ||| | |||||||| ||
Sbjct 512477 TTTCTTCATTCTGACAGTTCCTTTAGCGCCTACATCGCTGGTACCAATGGATACTCCAAC 512536
Query 363766 GGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGA 363825
|| | ||||||||||| || | | ||| ||||| | || ||||| || || ||
Sbjct 512537 GGTATTGTTCCCATGCTCCGCGCATACGACGCGACTGCTCGCTATGTCGATCAAGGCGGT 512596
Query 363826 GGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAG 363885
|||||| || || ||||| || ||||| ||||| || |||||||| | ||
Sbjct 512597 AACAAGCGCCCGGGTGCTTTTGCAATCTATCTTGAGCCATGGCACGCCGATATCTACGAA 512656
Query 363886 TTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTA 363944
|| | || ||||| ||||| ||| || || |||||| | |||||||| || || |||||
Sbjct 512657 TTCATCGACCTCCGTAAAAATCAC-GGCAAGGAGGAAGTCCGTGCACGCGACCTCTTCTA 512715
Query 363945 TGCACTTTGG 363954
||| || |||
Sbjct 512716 TGCGCTCTGG 512725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303353366210948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |