Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 109 1e-18 >seq5 Length=2330625 Score = 109 bits (120), Expect = 1e-18 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 363736 TACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGAC 363795 |||||| ||| || ||||| || ||||| | ||||||||||| || | || || Sbjct 514548 TACATTGCCGGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGT---AC 514604 Query 363796 AAT---ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATG 363852 ||| ||||| | || ||||| || || || || | | || || || || || Sbjct 514605 AATGAGACTGCTCGCTATGTCGATCAAGGCGGTAACAAACTCCCGGGCGCTTTCGCAATC 514664 Query 363853 TATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGA 363912 ||| | ||||| |||||||||| | |||||| |||| ||||| |||||| || Sbjct 514665 TATATTGAGCCATGGCATGCCGATACATATGAGTTCGTTGACCTCCGTAAAAACCACGGC 514724 Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGG 363954 || |||||| | ||||||||||| || ||||||||||||||| Sbjct 514725 AAGGAGGAAGTTCGTGCACGTGACCTCTTCTATGCACTTTGG 514766 Score = 105 bits (116), Expect = 2e-17 Identities = 384/610 (63%), Gaps = 56/610 (9%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 |||||| ||||| || ||||| ||| |||||||| | | | ||||| || ||| Sbjct 512117 AAGACGTTGGAGCGCTCTTACCTTCTTCGGATCAATGGCCGTGTCGCAGAACGTCCACAG 512176 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| | ||||| || ||| | || || || || | ||||| ||| ||| |||||| Sbjct 512177 CACATGATCATGCGCGTAGCTGTCGGCATTCACGGCGCTGATGTCGATCGCGCTATTGAA 512236 Query 363520 ACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCT 363579 || || || || | | ||| ||||| |||||| | |||||| | | ||| || Sbjct 512237 ACCTACAACCTGATGTCCGAACGTTACTTCACTCACGCCTCACCAACACTCTTCAACGCG 512296 Query 363580 GGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATC 363639 || || | ||||| || || || || || || | ||||| || || ||||| Sbjct 512297 GGTACACCCAATCCTCAATTGAGCTCGTGTTTCCTGGTTTGCATGAAAGATGACTCCATT 512356 Query 363640 GAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATT 363699 ||||| |||| ||| || || ||||| ||||| | || ||||| || || || ||| Sbjct 512357 GAGGGAATCTATGAAACTCTCAAGAACTGTGCCATGATCAGCAAGACGGCTGGTGGCATT 512416 Query 363700 GGTGTATCGATCCACAATGTTCGTGC-ACAGA---------------------------- 363730 || | |||||||| | || || |||| Sbjct 512417 GGACTCAATATCCACAACATCCGGGCTACAGGGTACGTCTTGCAATTGATTCCGTCTTCA 512476 Query 363731 -------------ACAGTTACATTCGCGGC-ACAGGG-----------GGATACTCGAAT 363765 |||||| | || ||| | ||| | |||||||| || Sbjct 512477 TTTCTTCATTCTGACAGTTCCTTTAGCGCCTACATCGCTGGTACCAATGGATACTCCAAC 512536 Query 363766 GGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGA 363825 || | ||||||||||| || | | ||| ||||| | || ||||| || || || Sbjct 512537 GGTATTGTTCCCATGCTCCGCGCATACGACGCGACTGCTCGCTATGTCGATCAAGGCGGT 512596 Query 363826 GGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAG 363885 |||||| || || ||||| || ||||| ||||| || |||||||| | || Sbjct 512597 AACAAGCGCCCGGGTGCTTTTGCAATCTATCTTGAGCCATGGCACGCCGATATCTACGAA 512656 Query 363886 TTTCTTGAGCTCCGGAAAAA-CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTA 363944 || | || ||||| ||||| ||| || || |||||| | |||||||| || || ||||| Sbjct 512657 TTCATCGACCTCCGTAAAAATCAC-GGCAAGGAGGAAGTCCGTGCACGCGACCTCTTCTA 512715 Query 363945 TGCACTTTGG 363954 ||| || ||| Sbjct 512716 TGCGCTCTGG 512725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353366210948