Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq3 159 4e-34
>seq3
Length=3164952
Score = 159 bits (176), Expect = 4e-34
Identities = 377/567 (66%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711
|||| ||| |||||||| ||| || | |||||||| | ||| || | ||| |||||
Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206
Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771
|| |||||||| ||||| ||||||||||| || | ||| || || || || || || ||
Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 32828
|| |||||||| || || || || || ||||| | | || ||| || | || |
Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1890326
Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888
| || ||||| | | ||||| || |||||| |||| ||||| || || |||||
Sbjct 1890327 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1890386
Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948
| ||||| || || || | || ||| || || | || ||||| || | |||
Sbjct 1890387 ACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGG 1890446
Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008
|| | || || || ||||| || ||||| || ||||||||||| | |||
Sbjct 1890447 GAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCC 1890506
Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068
|| | ||| || || | | || || || | | || || || || || || |||
Sbjct 1890507 TCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCA 1890566
Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA----G 33124
||| ||||||||||| | ||||| | ||| | || | || |||| |
Sbjct 1890567 GAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGCG 1890625
Query 33125 TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 33184
|||||||| || | || |||||| || | |||| ||||| | ||||| || || ||
Sbjct 1890626 GTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGC 1890685
Query 33185 CTCTGCCTTTTTATACATATTCCAGAT 33211
|| || ||||| ||||| | ||||||
Sbjct 1890686 TTCAGCTTTTTTGTACATTTGCCAGAT 1890712
Score = 141 bits (156), Expect = 1e-28
Identities = 358/538 (67%), Gaps = 10/538 (2%)
Strand=Plus/Minus
Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741
|| ||||| | |||||| | |||||| ||||| || | || ||||| || || || ||
Sbjct 1892457 CCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTC 1892398
Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801
|| ||||| || || || ||||| ||||| || ||||| || |||||||| ||||| ||
Sbjct 1892397 TTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAAC 1892338
Query 32802 GCAATAAGTCTCTCTCCATAAC--CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATC 32857
|| | | ||| || ||| || | | |||| |||||| | | ||||| ||
Sbjct 1892337 GCCACCAACCTCGTGGCA-AACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTC 1892279
Query 32858 GGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATT 32917
|| ||||| || || || || || ||||| || | ||| ||||| | | |
Sbjct 1892278 GGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTG 1892219
Query 32918 ACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 32977
| || | || ||||| || | ||| || ||||||| ||||||||||| ||
Sbjct 1892218 AGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCAT 1892159
Query 32978 GGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCG 33037
||||||||||| || || || | | || | |||||||| | |||| ||
Sbjct 1892158 CATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCG 1892099
Query 33038 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 33097
|| | | ||| || || || || ||||| || |||||||| |||| |||| |
Sbjct 1892098 CTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGA 1892039
Query 33098 TATAAAATATTTTTCGTCTGGTGTT-AGTTTA---TTCCAATCATTGATATCTTTAGATA 33153
||| |||| ||||| || || || ||| ||||| || ||||||||| || |
Sbjct 1892038 TATGAAATGGCGTTCGT-TGTCATTCAGGTTATCGTTCCAGTCGAAGATATCTTTGGACA 1891980
Query 33154 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|||| | ||||| |||||||| || |||| || || || ||||| | ||| ||
Sbjct 1891979 TATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1891922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631889114400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |