Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq6 111 1e-19 >seq1 Length=3258266 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || |||||||||||||| || || | ||||| |||| || ||||| || Sbjct 2272208 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2272267 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || |||| || || | ||| ||||| ||||||||||| || ||||| Sbjct 2272268 GACACTATTGACAACGTGAAGGCGAAGATTCA-GGACAAGGAAGGGATTCCTCCCGACCA 2272326 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || ||| | || || || || || || || || |||| || ||| | ||||||||| Sbjct 2272327 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2272386 Query 25178 TATTCAAAAAGAATCCAC 25195 |||||| ||||| || || Sbjct 2272387 TATTCAGAAAGAGTCTAC 2272404 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | ||||||||||| || Sbjct 2271926 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2271985 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | || || | ||| ||||| || || || || || ||| Sbjct 2271986 GACACTATCGA--CAATGTCAAGGCGAAGATTCA-GGACAAGGAGGGTATCCCTCCCGAC 2272042 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| || || || ||||| | || |||| ||||| | ||||||| Sbjct 2272043 CAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTAC 2272102 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || || || || Sbjct 2272103 AATATCCAGAAGGAGTCTACCCTTCA 2272128 >seq6 Length=2247897 Score = 111 bits (122), Expect = 1e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | ||||| |||| || ||||||||| Sbjct 301100 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 301159 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| ||||| | ||| ||||| || || || || |||||||| Sbjct 301160 GACACGATCGACAACGTGAAGGCAAAGATTCA-GGACAAGGAGGGTATCCCGCCTGACCA 301218 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| || ||||| ||| | || |||| |||||| | || ||||| Sbjct 301219 GCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 301278 Query 25178 TATTCAAAAAGAATCCACGCTACAT 25202 ||| || || || || || || ||| Sbjct 301279 TATCCAGAAGGAGTCGACTCTTCAT 301303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || ||||| | ||||| | || || ||||| || Sbjct 301375 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 301434 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| || || | || || | ||| ||||| ||||||||||| || || Sbjct 301435 GGACACGATCGA--CAATGTCAAGGCGAAGATTCAG-GACAAGGAAGGGATTCCTCCCGA 301491 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || ||||| || | || || | |||||| || || || Sbjct 301492 CCAGCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTA 301551 Query 25175 CAATATTCAAAAAGA 25189 |||||| || || || Sbjct 301552 CAATATCCAGAAGGA 301566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327926063410