Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3 179 4e-40
seq10 86.0 7e-12
>seq3
Length=3164952
Score = 179 bits (198), Expect = 4e-40
Identities = 379/560 (68%), Gaps = 9/560 (2%)
Strand=Plus/Minus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| ||||| || ||||| | |||||||| || |||| || || || ||||||
Sbjct 1892478 CAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1892419
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || ||||||||||| ||||| || |||||||||||| || || || ||
Sbjct 1892418 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1892359
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAATTACTGCT 93270
|| ||||| || || || || ||||| | | |||||| | | | | | |
Sbjct 1892358 ATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGTTGGTCAGA- 1892300
Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330
|||||| | | ||||| |||| || | ||| | || |||| || ||||| | ||
Sbjct 1892299 GATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATT 1892240
Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390
|| ||| | |||| | || || ||||| |||||||| | ||||| || |
Sbjct 1892239 GAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGT 1892180
Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450
||| || || | || ||||| ||||| ||||| || ||||| | |||| | |
Sbjct 1892179 TTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGC 1892120
Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510
|| ||||| ||||| | ||| || ||||| || ||||| ||||| ||||| || ||
Sbjct 1892119 TTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGC 1892060
Query 93511 aaaaaaaGCCA--ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC---C 93565
|||||| |||| | ||||| | || ||||| || | || || || ||||| |
Sbjct 1892059 AAAAAATGCCAGGACATATGAT--ATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTTC 1892002
Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625
|| ||| | | |||||| || | ||||| |||||| ||||||||||| || | |||
Sbjct 1892001 CAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCT 1891942
Query 93626 TTTTTGTACATATCCCATAT 93645
|| |||||||| | ||| ||
Sbjct 1891941 TTCTTGTACATCTGCCAAAT 1891922
Score = 176 bits (194), Expect = 5e-39
Identities = 380/568 (67%), Gaps = 3/568 (1%)
Strand=Plus/Plus
Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140
|| ||| ||||| || ||||||||||| | || ||||| || || | ||||||
Sbjct 1890145 TGAACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1890204
Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200
||| || | || || | || || || ||||| | ||| || ||||| || ||| ||
Sbjct 1890205 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1890264
Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260
| || || || || || ||||| || || || || || | || || ||||| | | |
Sbjct 1890265 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGC 1890324
Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320
| | | |||||| || ||||| || || || | || | ||| || | || |
Sbjct 1890325 GACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCT 1890384
Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380
| | ||| | || ||||| || || | | | || ||||| |||||||| | |
Sbjct 1890385 CAACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAA 1890444
Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440
| || || | || |||| ||| ||||| ||||||||| |||||||| || | |
Sbjct 1890445 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1890504
Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500
| || | ||| || || | || || | ||| || || || || ||||| || ||||
Sbjct 1890505 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCAT 1890564
Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC- 93559
| || || |||||||| || | | |||| | ||| || ||||| || |||||
Sbjct 1890565 CAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1890624
Query 93560 --TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617
|||| ||| ||| ||||||||||| || || | |||||| ||||||| || || |
Sbjct 1890625 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1890684
Query 93618 CTTCTGCTTTTTTGTACATATCCCATAT 93645
|||| |||||||||||||| | ||| ||
Sbjct 1890685 CTTCAGCTTTTTTGTACATTTGCCAGAT 1890712
>seq10
Length=1483421
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332
|||||||| |||||||||||||||| | | |||||||| || ||||| ||||||||||||
Sbjct 709922 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 709863
Query 126333 ACCCCAC 126339
| |||||
Sbjct 709862 ATCCCAC 709856
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332
|||||||| |||||||||||||||| | | |||||||| || ||||| ||||||||||||
Sbjct 720966 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 721025
Query 126333 ACCCCAC 126339
| |||||
Sbjct 721026 ATCCCAC 721032
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332
|||||||| |||||||||||||||| | | |||||||| || ||||| ||||||||||||
Sbjct 721193 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 721252
Query 126333 ACCCCAC 126339
| |||||
Sbjct 721253 ATCCCAC 721259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860702549360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |