Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 179 4e-40 seq10 86.0 7e-12 >seq3 Length=3164952 Score = 179 bits (198), Expect = 4e-40 Identities = 379/560 (68%), Gaps = 9/560 (2%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||| || ||||| | |||||||| || |||| || || || |||||| Sbjct 1892478 CAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1892419 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || ||||||||||| ||||| || |||||||||||| || || || || Sbjct 1892418 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1892359 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAATTACTGCT 93270 || ||||| || || || || ||||| | | |||||| | | | | | | Sbjct 1892358 ATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGTTGGTCAGA- 1892300 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | | ||||| |||| || | ||| | || |||| || ||||| | || Sbjct 1892299 GATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATT 1892240 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || ||| | |||| | || || ||||| |||||||| | ||||| || | Sbjct 1892239 GAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGT 1892180 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||| || || | || ||||| ||||| ||||| || ||||| | |||| | | Sbjct 1892179 TTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGC 1892120 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 || ||||| ||||| | ||| || ||||| || ||||| ||||| ||||| || || Sbjct 1892119 TTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGC 1892060 Query 93511 aaaaaaaGCCA--ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC---C 93565 |||||| |||| | ||||| | || ||||| || | || || || ||||| | Sbjct 1892059 AAAAAATGCCAGGACATATGAT--ATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTTC 1892002 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || ||| | | |||||| || | ||||| |||||| ||||||||||| || | ||| Sbjct 1892001 CAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCT 1891942 Query 93626 TTTTTGTACATATCCCATAT 93645 || |||||||| | ||| || Sbjct 1891941 TTCTTGTACATCTGCCAAAT 1891922 Score = 176 bits (194), Expect = 5e-39 Identities = 380/568 (67%), Gaps = 3/568 (1%) Strand=Plus/Plus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 || ||| ||||| || ||||||||||| | || ||||| || || | |||||| Sbjct 1890145 TGAACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1890204 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 ||| || | || || | || || || ||||| | ||| || ||||| || ||| || Sbjct 1890205 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1890264 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || || ||||| || || || || || | || || ||||| | | | Sbjct 1890265 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGC 1890324 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | | | |||||| || ||||| || || || | || | ||| || | || | Sbjct 1890325 GACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCT 1890384 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | | ||| | || ||||| || || | | | || ||||| |||||||| | | Sbjct 1890385 CAACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAA 1890444 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 | || || | || |||| ||| ||||| ||||||||| |||||||| || | | Sbjct 1890445 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1890504 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 | || | ||| || || | || || | ||| || || || || ||||| || |||| Sbjct 1890505 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCAT 1890564 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC- 93559 | || || |||||||| || | | |||| | ||| || ||||| || ||||| Sbjct 1890565 CAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1890624 Query 93560 --TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 |||| ||| ||| ||||||||||| || || | |||||| ||||||| || || | Sbjct 1890625 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1890684 Query 93618 CTTCTGCTTTTTTGTACATATCCCATAT 93645 |||| |||||||||||||| | ||| || Sbjct 1890685 CTTCAGCTTTTTTGTACATTTGCCAGAT 1890712 >seq10 Length=1483421 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 709922 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 709863 Query 126333 ACCCCAC 126339 | ||||| Sbjct 709862 ATCCCAC 709856 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 720966 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 721025 Query 126333 ACCCCAC 126339 | ||||| Sbjct 721026 ATCCCAC 721032 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 |||||||| |||||||||||||||| | | |||||||| || ||||| |||||||||||| Sbjct 721193 TGGCCGAGCGGTCTAAGGCGCCAGACTAAGGATCTGGTCCCTTCGGGGGCGTGGGTTCGA 721252 Query 126333 ACCCCAC 126339 | ||||| Sbjct 721253 ATCCCAC 721259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860702549360