Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 188 1e-42 seq5 89.7 1e-12 >seq3 Length=3164952 Score = 188 bits (208), Expect = 1e-42 Identities = 322/462 (70%), Gaps = 19/462 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || || || ||||||||||| ||||| ||||| |||||||| | | ||| | Sbjct 1890586 CTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCGCTTCTCG 1890527 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| ||||||||| ||||||||||| ||||| || || || || Sbjct 1890526 AACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGATGGAAAAT 1890467 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC----CGTCGA 42598 | ||| ||| ||| || || || | || |||||| ||| || | || Sbjct 1890466 ATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGACCCTAAGCAACGC 1890407 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | ||| | | ||| | || | ||||| || ||||| |||| | |||||||||||| Sbjct 1890406 GAGTACC----TTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGCGGACTG 1890351 Query 42659 GGCGCTCAACTGGATC---GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||| || ||||||| || ||| | | || || | ||| | | || ||||| Sbjct 1890350 GGCACTACGCTGGATCTCCGATCGTCGCTCCACA---TTTGCTGAGCGATTAGTCGCCTT 1890294 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 |||| || |||||||| |||||||| || | |||||||| ||||||||| | ||| | Sbjct 1890293 CGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAA 1890234 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | || || ||||| |||||||||||||| || ||||||||||| | |||||||| Sbjct 1890233 GCGTGGCCTC-ATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGGAA 1890175 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA 42876 |||||| ||||| || ||| | |||||| ||||| |||| Sbjct 1890174 TGCATACCGACTTCGCATGCTTGCTGTTC---AGCCATCTCA 1890136 Score = 143 bits (158), Expect = 5e-29 Identities = 376/563 (67%), Gaps = 13/563 (2%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 ||||||||||| || ||| || ||||| |||| ||||| || || |||| || Sbjct 1891931 ATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATGTCCAAAGAT 1891990 Query 42369 ACGGCCGGCTGGGAG--TCAC-TGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTG 42425 | || |||| | | || || ||| |||||| |||| | | | | ||| Sbjct 1891991 ATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATATCATATGTCCTG 1892050 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 || || || ||||| || ||||| || ||||| ||||| |||| |||| || Sbjct 1892051 GCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAGCGGTTTTCGAGC 1892110 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || || | ||| | ||||| || || || || || || || || ||| | Sbjct 1892111 GAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATGATGGAAAACATT 1892170 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC-CTGGATCCCGTCGAGCGTAA 42604 ||||| || ||| | || || | || |||||| ||| || | | ||||| Sbjct 1892171 CACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTGACTCTCAGC-AGCGTGG 1892229 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | || ||||| | || ||||| || || ||| ||||| ||||| | || ||||| || Sbjct 1892230 CCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAGACCGAGTGGGCCCT 1892289 Query 42665 CAACTGGATCGA-GAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 || |||||| || || ||| | ||||| | | |||| |||| || || | || Sbjct 1892290 CAGGTGGATCTCTGA---CCAACGGTCGACGTTTGCCACGAGGTTGGTGGCGTTCGCGGC 1892346 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGG 42780 || || || ||||||||||| || | || || || ||||||||||| ||| | ||| Sbjct 1892347 GGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTGAAGAAACGAGG 1892406 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | || ||||| || | ||||| || |||||||| || || ||||||| ||| |||||| Sbjct 1892407 TCTC-ATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGAAGGGATGCATA 1892465 Query 42841 GGGACTTTGCCTGCCTCCTGTTC 42863 || |||||||| ||| ||||| Sbjct 1892466 CAGATTTTGCCTGTCTCTTGTTC 1892488 >seq5 Length=2330625 Score = 89.7 bits (98), Expect = 1e-12 Identities = 201/295 (68%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACG--GGGCTGCCCTCGTAGGTCGGGT 244355 ||||| | |||||| |||| || || | | |||| |||||||| ||||| || || Sbjct 513549 CCCCAAAGGTCAAATTGCAACAAGCCTTCG--GACGCAGGGCTGCCAGAGTAGGACGAGT 513492 Query 244356 AGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTC 244414 | || || || || |||| || ||| || | || | ||||| | ||| || ||| Sbjct 513491 ACGGGCCATCTTTCTCAGCCATCTCGACA-CTAGCTTCCACAGCGGCATGGTATATTGTC 513433 Query 244415 TCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATC 244474 ||||||||| || |||| | ||| |||| | | || || |||| || ||| Sbjct 513432 TCGAAGATCTGCTGATTCAGCTTGCGCGCCTGCTCTGATTCAAAAGGCATGCGCAAGATC 513373 Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGG-A 244533 ||||| || || || ||||||||||||| || || || | ||| ||| |||||| | Sbjct 513372 ATGAAAGTATCCGCAAGACCCTGCACGCCGAGACCAATAGGGCGGTGACGCATGTTGGAA 513313 Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 | || | || || |||||||| ||||| ||||||| | ||| |||||| Sbjct 513312 TTACGTGAC-TCAGGAACGGGGTAGTAGTTGACGTCGATGATACGGTTCAGGTTG 513259 Score = 87.8 bits (96), Expect = 3e-12 Identities = 198/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 244299 CCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGG 244358 |||| | ||||||||| | || || | | || |||||||| |||| || ||| | Sbjct 515586 CCCAAAGGTCAAACTGTAAGAGGCCTTCGGACACAGGGCTGCCAGAATAGGACGAGTACG 515527 Query 244359 GACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 | ||||| || ||||| || ||| || | || | ||||| | ||| || |||||| Sbjct 515526 GGCCGTCTTTCTTGGCCATCTCGACA-CTAGCTTCCACAGCGGCATGGTATATTGTCTCG 515468 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCATCA 244475 |||||| || |||| | || |||| | ||| | |||||| ||| | |||| Sbjct 515467 AAGATCTGCTGATTCAGCTTGCACGCCTG--CTCAGATTCGAAGGGCATGTGGAAGATCA 515410 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC 244535 |||| || || || ||||||||||||| || | || | || ||| |||||||| Sbjct 515409 TGAAAGTATCCGCAAGGCCCTGCACGCCGAGACCAGTAGGGCGATGACGCATGTTGGAGT 515350 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 || || || |||||||| ||||| ||||||| | ||| |||||| Sbjct 515349 TACGTGCCTCAGGAACGGGGTAGTAGTTGACGTCGATAATACAGTTCAGGTTG 515297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339034740640