Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 seq1 111 2e-19 >seq6 Length=2247897 Score = 127 bits (140), Expect = 2e-24 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || |||||||| |||| ||| || || |||| || |||||||| || Sbjct 301572 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 301513 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130 ||||| ||||| ||||||||||||| || | | ||||||||| ||| | || | || Sbjct 301512 GCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTT 301454 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 || | | | |||||| || || || || | |||||| || || ||||| || || Sbjct 301453 GACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGT 301394 Query 42191 CTTTACAAAGATTTGCATT--TTCACGCCGA 42219 ||| |||||||| |||||| | ||||| || Sbjct 301393 CTTGACAAAGATCTGCATTCCTCCACGCAGA 301363 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || | ||||| || | || || || ||||| |||||||| Sbjct 301291 CTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAA 301232 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| | |||| | ||| Sbjct 301231 AATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAATCTTTGCCTTCACGT 301173 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || |||| |||||| || ||||| || || ||||| | Sbjct 301172 TGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGA 301113 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 301112 CGAAGATCTGCAT 301100 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 42001 CCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTA 42060 ||||||| | || |||||| ||||| || || |||| || || || |||| || | Sbjct 300797 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300738 Query 42061 GCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGA 42120 ||||||| || ||||| || | ||||||||||| | || | || |||||||||| || Sbjct 300737 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300678 Query 42121 TTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGC 42180 | || |||| | | | |||||| || ||||| |||| |||||| || || | Sbjct 300677 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300618 Query 42181 CCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | |||||| || ||||| ||||| Sbjct 300617 CAGTCAACGTCTTCACGAAGATCTGCAT 300590 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | || ||| | || | |||||| ||| |||||| ||||| || || || | Sbjct 301098 CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAA 301039 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || |||||||| || ||||| || | ||||||||||| | || Sbjct 301038 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 300979 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| | | ||| | || | || | | | | |||||| || || || Sbjct 300978 ATGCCCTCCTTAT-CTTGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGAC 300920 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||| || || |||||||| || ||||| || || |||||||| Sbjct 300919 CTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300872 >seq1 Length=3258266 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||||||||| | || || ||| | || || ||||| ||||||||||| Sbjct 2272117 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2272058 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||||| || | | |||||||||| ||| | || | |||| Sbjct 2272057 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACAT 2271999 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| || | |||||||| |||||||| | ||||| | Sbjct 2271998 TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGA 2271939 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 2271938 CGAAGATCTGCAT 2271926 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 41999 CACCAAA-TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCAT 42057 |||||| ||||| || ||| || |||||||||||||| | ||||| ||| | || | Sbjct 2272418 CACCAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCT 2272359 Query 42058 CTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCA 42117 | | |||||| |||||||| || | || |||||||||| || | | ||||||||| Sbjct 2272358 CCAACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC- 2272300 Query 42118 TGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176 ||| | || | | ||| | | | ||||| || || || |||| ||||| || Sbjct 2272299 TGAATCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTC 2272240 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| | |||||||| || || ||||| Sbjct 2272239 TTCCCCGTCAAAGTCTTTACGAAAATCTGCAT 2272208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212704937760