Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq5 102 8e-17 seq1 98.7 1e-15 seq3 93.3 4e-14 >seq6 Length=2247897 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | ||| || ||||||||||| || || | Sbjct 301293 GACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCG 301234 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || ||||| ||||| || || ||||| || ||||| ||| | |||| || | Sbjct 301233 AAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC-CTGAATCTTTGCCTTCAC 301175 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | |||||| ||||||| ||| | ||| || |||||||| || | Sbjct 301174 GTTG-TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCT 301116 Query 138599 TTACAAAAATCTGCATGGCT 138618 | || || ||||||||| || Sbjct 301115 TGACGAAGATCTGCATGCCT 301096 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 138396 CAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACG 138455 |||||||| | | ||| | | | |||||||| || ||||| ||||| | || || Sbjct 300519 CAAACGCAC--CGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCG 300462 Query 138456 CGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTC 138515 ||||||||| || || || | |||| | |||||| ||||| || || || ||||| Sbjct 300461 GCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTC 300402 Query 138516 TTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCG 138574 ||||| ||| | || | || | | || | |||||| | ||||||||||||| | Sbjct 300401 CTTGTCC-TGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGG 300343 Query 138575 TCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAATA 138625 | | ||| || ||||| || || || || || ||||||||| | ||||||| Sbjct 300342 TGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCATGTC-TATAATA 300293 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138409 AAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGT 138468 ||||| | | | |||||||| |||||||| ||||| | || || ||||||||| Sbjct 300795 AAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGC 300736 Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528 || || || | |||| | ||||| ||||| || || || || || ||||| ||| Sbjct 300735 TGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 300676 Query 138529 TTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 || || | | || | ||||| | ||||||||||||| ||| | ||| || ||| Sbjct 300675 TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCA 300616 Query 138589 GTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || || || || ||||||||| || Sbjct 300615 GTCAACGTCTTCACGAAGATCTGCATGCCT 300586 >seq5 Length=2330625 Score = 102 bits (112), Expect = 8e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 154283 CAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGC 154342 || ||||||||| | || ||| ||| || | || ||||| ||||| || || || Sbjct 511735 CAGGAAACACGAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGC 511676 Query 154343 GTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATC 154402 ||| || || || | ||||| | ||| ||||| || ||| |||| |||| | Sbjct 511675 GTGAGTGAAGTAACGTTCGGACATCAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGC 511616 Query 154403 GCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||| || |||||||||| ||||||||| |||||||| ||||| Sbjct 511615 GCCGTGAATGCCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCTGCGAC 511562 Score = 102 bits (112), Expect = 8e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 154283 CAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGC 154342 || ||||||||| | || ||| ||| || | || ||||| ||||| || || || Sbjct 512332 CAGGAAACACGAGCTCAATTGAGGATTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGC 512273 Query 154343 GTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATC 154402 ||| || || || | ||||| | ||| ||||| || ||| |||| |||| | Sbjct 512272 GTGAGTGAAGTAACGTTCGGACATCAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGC 512213 Query 154403 GCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||| || |||||||||| ||||||||| |||||||| ||||| Sbjct 512212 GCCGTGAATGCCGACAGCTACGCGCATGATCATGTGCTGTGGACGTTCTGCGAC 512159 >seq1 Length=3258266 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||||| || || || | | Sbjct 2272686 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCA 2272627 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || |||||||| ||||| || || || || || || ||| || ||| | Sbjct 2272626 AAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACA 2272567 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| ||||| | || | || || |||||||| ||||| Sbjct 2272566 TTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTC 2272507 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2272506 ACAAAGATCTGCAT 2272493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||| ||||| ||| | ||| ||| ||||| | || || || | Sbjct 2272401 GACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCG 2272342 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | || || ||||| ||||| || ||||| ||||| ||| | || | || | Sbjct 2272341 AAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCC-TGAATCTTCGCCTTCAC 2272283 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||| | ||||| ||||||| || | ||| || || |||| ||| | Sbjct 2272282 GTTGT-CAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCT 2272224 Query 138599 TTACAAAAATCTGCATG 138615 |||| |||||||||||| Sbjct 2272223 TTACGAAAATCTGCATG 2272207 >seq3 Length=3164952 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || || || || | |||| | |||||||| || || ||||||| |||||||||||||| Sbjct 1890005 GCCCTTCCTGTAGGGCTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTT 1889946 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769 || || || |||||| | | ||||| |||| ||| |||||| || || Sbjct 1889945 GTTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCC 1889886 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 || || |||||| ||| || || | |||| ||||||||||| || |||||||| || Sbjct 1889885 TTCGACTTTATGGACATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1889827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262313154080