Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 3e-28
seq6 98.7 9e-16
seq5 82.4 7e-11
>seq1
Length=3258266
Score = 140 bits (154), Expect = 3e-28
Identities = 152/199 (76%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||||||||| ||||||||||||||| | || || ||| || | ||| ||||||
Sbjct 2272404 GTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2272345
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| || ||||| |||||||| || || ||||||||| || ||| |||
Sbjct 2272344 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC 2272285
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| ||||| | | ||||||| | |||||| |||| || | ||| || || |||| |||
Sbjct 2272284 ACGTTGT-CAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGT 2272226
Query 127096 TTTTACAAAAATCTGCATG 127114
||||| ||||||||||||
Sbjct 2272225 CTTTACGAAAATCTGCATG 2272207
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || |||||||||||| | |||||| ||| || |||||||| |||
Sbjct 2272122 GTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCA 2272063
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | |||||||| |||||||| || |||||||||||| || ||| ||||
Sbjct 2272062 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 2272003
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||||| | ||| ||||| | || | || ||||| |||| ||
Sbjct 2272002 ACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTC 2271943
Query 127097 TTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 2271942 TTGACGAAGATCTGCATG 2271925
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || || || ||||| ||| | || || ||| || ||||| || ||
Sbjct 2272690 CGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCC 2272631
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
|| | || | ||||| ||||| || || ||||||||||| ||| ||| ||| ||
Sbjct 2272630 CGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTT 2272571
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
|| | |||| ||||| | |||||| || | ||| | || ||||| ||||| ||
Sbjct 2272570 GACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGT 2272511
Query 127096 TTTTACAAAAATCTGCAT 127113
||| ||||| ||||||||
Sbjct 2272510 TTTCACAAAGATCTGCAT 2272493
>seq6
Length=2247897
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 126906 CCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTA 126965
||||||| | || ||||| || ||||| || || || | ||||| || || |
Sbjct 300797 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300738
Query 126966 GCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGA 127025
|||| || || ||| ||||||| |||||||| || || || ||||||||||||||| ||
Sbjct 300737 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300678
Query 127026 TTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGC 127085
| || ||||| | |||| ||||| | ||| || |||| || | ||| || |
Sbjct 300677 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300618
Query 127086 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117
| |||| || || || || ||||||||| ||
Sbjct 300617 CAGTCAACGTCTTCACGAAGATCTGCATGCCT 300586
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| || || ||| | ||||| || || ||||| || ||
Sbjct 301068 GTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCC 301009
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || || || ||||||||||| || || ||| |||
Sbjct 301008 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 300949
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | | |||||| |||| || | ||| ||||| || || ||
Sbjct 300948 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 300889
Query 127097 TTTACAAAAATCTGCAT 127113
|| || ||||| |||||
Sbjct 300888 TTGACGAAAATTTGCAT 300872
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/203 (72%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || |||||||| || | ||||| ||| || || || || |||
Sbjct 301296 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCA 301237
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035
||| | || | |||||||| || || || || |||||||||||| ||| | | || |||
Sbjct 301236 GCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAATCTTTGCCTT 301178
Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094
| |||| |||| ||||| | |||||| |||| || | ||| ||||| ||||| |
Sbjct 301177 CACGTTG-TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGG 301119
Query 127095 TTTTTACAAAAATCTGCATGGCT 127117
| || || || ||||||||| ||
Sbjct 301118 TCTTGACGAAGATCTGCATGCCT 301096
>seq5
Length=2330625
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/224 (70%), Gaps = 8/224 (4%)
Strand=Plus/Minus
Query 147274 TAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGA 147333
||||| || || ||| ||| || || ||||| |||||||||||| | || ||| |||
Sbjct 511770 TAGATTCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACACGAGCTCAATTGAGGA 511711
Query 147334 CGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCC---CAGACTC 147390
|| ||||| || || || || |||||| ||||| || | | |||
Sbjct 511710 TTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAA-GTAACGTTCGGAC-- 511654
Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450
|||| | || |||||||| |||| || ||| ||||||||||| | | || |||
Sbjct 511653 ATCAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACG 511594
Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCAC-GTCATTGA 147493
||||||| ||||||||| || ||||| || | ||| | ||||||
Sbjct 511593 CGCATGATCATGTGCTGTGGACGTTCTGCGA-CACGGCCATTGA 511551
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/224 (70%), Gaps = 8/224 (4%)
Strand=Plus/Minus
Query 147274 TAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGA 147333
||||| || || ||| ||| || || ||||| |||||||||||| | || ||| |||
Sbjct 512367 TAGATTCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACACGAGCTCAATTGAGGA 512308
Query 147334 CGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCC---CAGACTC 147390
|| ||||| || || || || |||||| ||||| || | | |||
Sbjct 512307 TTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAA-GTAACGTTCGGAC-- 512251
Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450
|||| | || |||||||| |||| || ||| ||||||||||| | | || |||
Sbjct 512250 ATCAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACG 512191
Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCAC-GTCATTGA 147493
||||||| ||||||||| || ||||| || | ||| | ||||||
Sbjct 512190 CGCATGATCATGTGCTGTGGACGTTCTGCGA-CACGGCCATTGA 512148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500716787360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |