Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 seq6 98.7 9e-16 seq5 82.4 7e-11 >seq1 Length=3258266 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||||||||||||| | || || ||| || | ||| |||||| Sbjct 2272404 GTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2272345 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| || ||||| |||||||| || || ||||||||| || ||| ||| Sbjct 2272344 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC 2272285 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | ||||||| | |||||| |||| || | ||| || || |||| ||| Sbjct 2272284 ACGTTGT-CAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGT 2272226 Query 127096 TTTTACAAAAATCTGCATG 127114 ||||| |||||||||||| Sbjct 2272225 CTTTACGAAAATCTGCATG 2272207 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || |||||||||||| | |||||| ||| || |||||||| ||| Sbjct 2272122 GTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCA 2272063 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| |||||||| || |||||||||||| || ||| |||| Sbjct 2272062 GCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTG 2272003 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||||| | ||| ||||| | || | || ||||| |||| || Sbjct 2272002 ACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTC 2271943 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 2271942 TTGACGAAGATCTGCATG 2271925 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| | || || ||| || ||||| || || Sbjct 2272690 CGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCC 2272631 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 || | || | ||||| ||||| || || ||||||||||| ||| ||| ||| || Sbjct 2272630 CGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTT 2272571 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | |||| ||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 2272570 GACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGT 2272511 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| ||||| |||||||| Sbjct 2272510 TTTCACAAAGATCTGCAT 2272493 >seq6 Length=2247897 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 126906 CCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTA 126965 ||||||| | || ||||| || ||||| || || || | ||||| || || | Sbjct 300797 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300738 Query 126966 GCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGA 127025 |||| || || ||| ||||||| |||||||| || || || ||||||||||||||| || Sbjct 300737 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300678 Query 127026 TTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGC 127085 | || ||||| | |||| ||||| | ||| || |||| || | ||| || | Sbjct 300677 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300618 Query 127086 CGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 | |||| || || || || ||||||||| || Sbjct 300617 CAGTCAACGTCTTCACGAAGATCTGCATGCCT 300586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| || || ||| | ||||| || || ||||| || || Sbjct 301068 GTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCC 301009 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || ||||||||||| || || ||| ||| Sbjct 301008 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 300949 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | |||||| |||| || | ||| ||||| || || || Sbjct 300948 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 300889 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||| ||||| Sbjct 300888 TTGACGAAAATTTGCAT 300872 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || |||||||| || | ||||| ||| || || || || ||| Sbjct 301296 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCA 301237 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 ||| | || | |||||||| || || || || |||||||||||| ||| | | || ||| Sbjct 301236 GCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC-TGAATCTTTGCCTT 301178 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | |||| |||| ||||| | |||||| |||| || | ||| ||||| ||||| | Sbjct 301177 CACGTTG-TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGG 301119 Query 127095 TTTTTACAAAAATCTGCATGGCT 127117 | || || || ||||||||| || Sbjct 301118 TCTTGACGAAGATCTGCATGCCT 301096 >seq5 Length=2330625 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 147274 TAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGA 147333 ||||| || || ||| ||| || || ||||| |||||||||||| | || ||| ||| Sbjct 511770 TAGATTCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACACGAGCTCAATTGAGGA 511711 Query 147334 CGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCC---CAGACTC 147390 || ||||| || || || || |||||| ||||| || | | ||| Sbjct 511710 TTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAA-GTAACGTTCGGAC-- 511654 Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450 |||| | || |||||||| |||| || ||| ||||||||||| | | || ||| Sbjct 511653 ATCAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACG 511594 Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCAC-GTCATTGA 147493 ||||||| ||||||||| || ||||| || | ||| | |||||| Sbjct 511593 CGCATGATCATGTGCTGTGGACGTTCTGCGA-CACGGCCATTGA 511551 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 147274 TAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGA 147333 ||||| || || ||| ||| || || ||||| |||||||||||| | || ||| ||| Sbjct 512367 TAGATTCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACACGAGCTCAATTGAGGA 512308 Query 147334 CGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCC---CAGACTC 147390 || ||||| || || || || |||||| ||||| || | | ||| Sbjct 512307 TTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAA-GTAACGTTCGGAC-- 512251 Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450 |||| | || |||||||| |||| || ||| ||||||||||| | | || ||| Sbjct 512250 ATCAGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACG 512191 Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCAC-GTCATTGA 147493 ||||||| ||||||||| || ||||| || | ||| | |||||| Sbjct 512190 CGCATGATCATGTGCTGTGGACGTTCTGCGA-CACGGCCATTGA 512148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500716787360