Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 seq1 118 2e-21 seq8 87.8 4e-12 >seq6 Length=2247897 Score = 131 bits (144), Expect = 4e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| || || |||||| |||| |||||||||| || || | || || || | Sbjct 301583 CAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGA 301524 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||| || ||||| ||||| ||||||||||| ||| ||| ||||| ||||||| Sbjct 301523 GCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 301464 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || |||| ||||| | | || || |||| |||||| ||||||| Sbjct 301463 TCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTAC 301404 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||| || || ||||| || || Sbjct 301403 CCGTGAGGGTCTTGACAAAGATCTG 301379 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 || || || ||||||||||| |||| ||| ||||| | | || | || || || ||| Sbjct 300508 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 300449 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || |||||||| | |||||||||||| || |||||||| ||||||||| Sbjct 300448 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATC 300389 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||||||| |||| |||||| | | || || || | ||||||||||| || Sbjct 300388 TTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 300329 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || || Sbjct 300328 GTGAGGGTCTTCACGAAGATCTG 300306 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 199424 AGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGC 199483 || || |||||||||||||| |||| |||||||| | | ||| | |||||| || || Sbjct 301305 AGATGAAGAGTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGT 301246 Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || ||||| ||||| ||||||||||| || || || || ||||||||| Sbjct 301245 TGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATC 301186 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 ||| ||||||| |||| ||||| | | || || || | |||||||||||| || Sbjct 301185 TTTGCCTTCACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCA 301126 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || Sbjct 301125 GTCAGGGTCTTGACGAAGATCTG 301103 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || | || |||||||| || | ||| ||||| | | ||| | || ||| Sbjct 301083 AGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCT 301024 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | |||||||||||||| ||| || || || Sbjct 301023 TCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCT 300964 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||||| | | || || || | ||| |||||| Sbjct 300963 TGAATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTC 300904 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || |||||||| Sbjct 300903 TTGCCCGTGAGGGTCTTGACGAAAATTTG 300875 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| ||||||||||| || | ||| ||||||| | || | || || || |||||| Sbjct 300792 TGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGC 300733 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || |||||||| | ||||||||||| || || || || ||||| ||||| Sbjct 300732 TTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 300673 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| |||| ||||| | || || || || | |||||||||||| || || Sbjct 300672 GCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTC 300613 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || ||||| || || || Sbjct 300612 AACGTCTTCACGAAGATCTG 300593 >seq1 Length=3258266 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||| || ||||||||||| |||| ||||||||| | | ||| Sbjct 2272713 CGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTC 2272654 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || || || || ||||| || ||||| || || Sbjct 2272653 CGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCC 2272594 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| || || |||| ||||| | | || || ||||| Sbjct 2272593 TCCTTATCCTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAG 2272534 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || ||||||||||| || || Sbjct 2272533 GTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTG 2272496 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| | ||| ||||| || || | ||||| || | | ||| | ||||| |||| Sbjct 2272415 CAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2272356 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 ||||||||| |||||||| | || |||||||| ||| ||| ||||| ||||||| Sbjct 2272355 ACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 2272296 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||||||| || | ||||| | | || || || | ||||||||||| | Sbjct 2272295 TCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCC 2272236 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 |||| | ||| || || ||||| || Sbjct 2272235 CCGTCAAAGTCTTTACGAAAATCTG 2272211 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| |||||||||||||| |||| ||||||||| || |||| ||||| Sbjct 638296 AGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTCCGGCCATCC 638355 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| || ||||||||||| |||||||| || || Sbjct 638356 TCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGATCAGG 638396 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || ||| || || |||||||| ||||| |||| ||||||||||| ||| || Sbjct 2271918 CGGAGGCGCAAGACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTA 2271859 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | ||||| || ||||| ||||| ||||| |||||||| || ||||| ||| Sbjct 2271858 CGGCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGTTGTTGGTCGGGA 2271808 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 199422 CAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCA 199481 ||||||| || || |||||||| |||| ||||| || | | || | ||||| || | Sbjct 2272133 CAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAA 2272074 Query 199482 GCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAA 199541 |||| || || |||||||| |||||||||||||| ||| || || || ||||||| Sbjct 2272073 GCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAA 2272014 Query 199542 TCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTAC 199601 |||| ||| || |||| ||||| | | || || || | ||||| ||||| | Sbjct 2272013 TCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGC 2271954 Query 199602 CCGTGAGAGTTTTCACAAAAATTTG 199626 |||| | || || || || || || Sbjct 2271953 CCGTCAATGTCTTGACGAAGATCTG 2271929 Score = 84.2 bits (92), Expect = 5e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 |||||||| |||||||||||||| ||||| | ||| | |||||||||| | |||||| Sbjct 2272337 ATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAATATTCAGAAA 2272396 Query 200998 GAGTCTACTCTTCACCTTG 201016 ||||||||| | ||||||| Sbjct 2272397 GAGTCTACTTTGCACCTTG 2272415 >seq8 Length=1872454 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || ||||||||||||| ||| || || | || | || ||| Sbjct 434453 AGGACAAGGTGGAGGGTAGACTCCTTTTGGATGTTATAATCGCTGAGGGTGCGACCGTCT 434512 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||||||||| || || || ||||||||||| || Sbjct 434513 TCGAGCTGCTTTCCGGCAAAAATCAGGCGCTGCTGGTCGGG 434553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921388530938