Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 224 1e-53 seq1 122 9e-23 seq6 109 5e-19 >seq3 Length=3164952 Score = 224 bits (248), Expect = 1e-53 Identities = 388/561 (69%), Gaps = 7/561 (1%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| | || ||||| || ||||| || ||||||| ||| |||||||| Sbjct 1892489 TGAACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAG 1892430 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 || || || || |||||||| || ||||| || ||||| || || | || ||| | Sbjct 1892429 AAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATC 1892370 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||||| || || || |||||||| ||||||| | | | | ||||| | Sbjct 1892369 CGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACC 1892310 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || | | |||||| | || ||||| |||| ||| | |||||||| || || || | Sbjct 1892309 GTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCT 1892250 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGG 133183 |||| | || || | || || | ||| | | |||||| ||||||||| Sbjct 1892249 CGATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGA 1892190 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 || || |||||||||| | ||| ||||| ||||||||| || ||||| || || Sbjct 1892189 GAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGA 1892130 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAA--CGCTCGACCAGATTTTCGTTGACGATGCC 133301 | || | | || ||||| | ||||| ||||| |||||||| |||||||| || || Sbjct 1892129 CTTCAGCGGCTTGTACTTC--GCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACC 1892072 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 |||| ||||| ||||| ||||| || | ||||||||||| |||||||| |||| Sbjct 1892071 GTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAG 1892012 Query 133362 GCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418 | || ||||||| | || ||||||| || | ||| ||| ||||||||||| Sbjct 1892011 GTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGA 1891952 Query 133419 CGCCTCGGCTTTTTTGTACAT 133439 |||| |||||| |||||||| Sbjct 1891951 AGCCTGGGCTTTCTTGTACAT 1891931 Score = 219 bits (242), Expect = 4e-52 Identities = 389/562 (69%), Gaps = 9/562 (2%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 |||||| |||||| || |||||| ||||| |||||||| | |||||||| ||| Sbjct 1890145 TGAACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGG 1890204 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | || ||||||||||| || || || | ||| || || | ||||||| | Sbjct 1890205 AGAAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAAC 1890264 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 | || ||||| | |||||| || || ||||| || || | ||||| | || |||| Sbjct 1890265 CGGAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAG- 1890323 Query 133064 CTTTGCT-GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 | | | || ||||||||| || ||||| || ||||| |||||| || || || || Sbjct 1890324 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTC 1890383 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGA 133180 || | || | || || | | | | | | ||| | | ||| || ||||| | Sbjct 1890384 TCAACAGCATCGAA--AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAA 1890441 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 | || || | || ||| | || ||||| ||||| || ||||| ||||| | Sbjct 1890442 GAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAAC 1890501 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 ||||||| || |||| || || | | ||| ||||| || || || ||||||||||||| Sbjct 1890502 GCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGC 1890561 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 | || |||||| ||||| || || || ||| || || || ||||| |||||||| | Sbjct 1890562 CATCAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAA 1890621 Query 133361 AGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACG 133417 ||| | ||||||| | || || |||||||||| ||| ||| | ||||| || | Sbjct 1890622 GGCGGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAG 1890681 Query 133418 ACGCCTCGGCTTTTTTGTACAT 133439 |||| || |||||||||||||| Sbjct 1890682 ACGCTTCAGCTTTTTTGTACAT 1890703 >seq1 Length=3258266 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| ||||||||| | || |||||| | || Sbjct 2272493 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2272552 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| || || ||||| || || | || ||| Sbjct 2272553 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2272612 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| |||||||| ||||| || || | || ||||| |||||||||| Sbjct 2272613 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2272672 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||||| || | || || ||| | | ||||| Sbjct 2272673 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2272719 >seq6 Length=2247897 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||||||||| || || || |||| |||||| | | Sbjct 300872 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300931 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | || || ||||| |||||| | ||||| Sbjct 300932 GACACGATCGATAACG-TGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCA 300990 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || |||| ||||| || |||||| || Sbjct 300991 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAA 301050 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| | || ||||| | || || ||| Sbjct 301051 CATTCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGT 301087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172712469760