Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 seq5 100 4e-16 >seq3 Length=3164952 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 |||||||||||| | |||| || || ||| ||||| || |||||||| ||||| ||| Sbjct 1890316 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1890257 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | ||| | |||||||| || |||||||| || ||| ||||||||| || Sbjct 1890256 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1890197 Query 102294 CTTATCTCTCGTGACGAGGGA 102314 || ||| ||||||||||||| Sbjct 1890196 CTCATCAGTCGTGACGAGGGA 1890176 >seq5 Length=2330625 Score = 100 bits (110), Expect = 4e-16 Identities = 159/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| ||||| | || | |||||| |||| ||||| |||| || |||| || || Sbjct 512516 GGTACCAATGGATACTCCAACGGTATTGTTCCCATGCTCCGCGCATACGACGCGACTGCT 512575 Query 111963 CGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 |||||||| | |||| || ||| ||| || | ||| |||||||||||||| Sbjct 512576 CGCTATGTCGATCAAGGCGGTAACAAGCGCCCGGGTGCTTTTGCAATCTATCTTGAGCCA 512635 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||||| |||||| || ||| | || | ||| || || || | ||||| | Sbjct 512636 TGGCACGCCGATATCTACGAATTCATCGACCTCCGTAAAAATCACGGCAAGGAGGAAG-T 512694 Query 112080 CGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | |||| ||||| ||||||| || |||||||| || ||||| || Sbjct 512695 CCGTGCACGCGACCTCTTCTATGCGCTCTGGATCCCCGATCTTTT 512739 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 13/229 (6%) Strand=Plus/Plus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 ||||| ||||| | || |||||||| |||| ||||| |||| | || | || || Sbjct 514557 GGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGTACAATGAGACTGCT 514616 Query 111963 CGCTATGTAAACCAAGCTGGGCGTCGCAA------GGGATCTATCGCAGTCTATCTTGAG 112016 |||||||| | |||| || | ||| ||| || ||||| ||||| ||||| Sbjct 514617 CGCTATGTCGATCAAGGCGG---TAACAAACTCCCGGGCGCTTTCGCAATCTATATTGAG 514673 Query 112017 CCATGGCACGCGGATATCAT-GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 |||||||| || |||| ||| |||||| |||| | ||| ||||| || | ||||| Sbjct 514674 CCATGGCATGCCGATA-CATATGAGTTCGTTGACCTCCGTAAAAACCACGGCAAGGAGGA 514732 Query 112076 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | | |||| || || ||||||| || || ||||| || ||||| || Sbjct 514733 AGTTC-GTGCACGTGACCTCTTCTATGCACTTTGGATCCCCGATCTTTT 514780 Score = 82.4 bits (90), Expect = 9e-11 Identities = 167/248 (67%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| ||||||| || || |||| || || || | ||| | ||| | | Sbjct 511574 CCACAGCACATGATCATGCGCGTAGCTGTCGGCATTCACGGCGCTGATGTCGATCGCGCT 511633 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || ||||||| || |||| ||||| ||||||| |||||| Sbjct 511634 ATTGAAACCTACAACCTGATGTCCGAACGTTACTTCACTCACGCCTCACCAACACTCTTC 511693 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| |||||||| | || ||| || | |||||||| || | || || || Sbjct 511694 AACGCGGGTACACCCAATCCTCAATTGAGCTCGTGTTTCCTGGTTTGCATGAAAGATGAC 511753 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || || | ||||||| | |||||| ||| ||| ||||||| Sbjct 511754 TCCATTGAGGGAATCTATGAAACTCTCAAGAACTGTGCCATGATCAGCAAGACGGCTGGT 511813 Query 111852 GGTATCGG 111859 || || || Sbjct 511814 GGCATTGG 511821 Score = 82.4 bits (90), Expect = 9e-11 Identities = 167/248 (67%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| ||||||| || || |||| || || || | ||| | ||| | | Sbjct 512171 CCACAGCACATGATCATGCGCGTAGCTGTCGGCATTCACGGCGCTGATGTCGATCGCGCT 512230 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || ||||||| || |||| ||||| ||||||| |||||| Sbjct 512231 ATTGAAACCTACAACCTGATGTCCGAACGTTACTTCACTCACGCCTCACCAACACTCTTC 512290 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| |||||||| | || ||| || | |||||||| || | || || || Sbjct 512291 AACGCGGGTACACCCAATCCTCAATTGAGCTCGTGTTTCCTGGTTTGCATGAAAGATGAC 512350 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || || | ||||||| | |||||| ||| ||| ||||||| Sbjct 512351 TCCATTGAGGGAATCTATGAAACTCTCAAGAACTGTGCCATGATCAGCAAGACGGCTGGT 512410 Query 111852 GGTATCGG 111859 || || || Sbjct 512411 GGCATTGG 512418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742291370080