Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 187 6e-42 seq6 140 7e-28 >seq1 Length=3258266 Score = 187 bits (206), Expect = 6e-42 Identities = 166/208 (80%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 ||||||| | ||| |||||||| |||||||||||||||| ||||||| |||||| || | Sbjct 2272415 CAAGGTGCAAAGTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCA 2272356 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 |||||| || |||||||| | ||||| ||||| |||||||| ||||| ||||| |||| Sbjct 2272355 ACTGCTTTCCAGCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 2272296 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||| ||||| ||||| ||||||||| || || || || || | |||||| | Sbjct 2272295 TCTTCGCCTTCACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCC 2272236 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| |||||||| | ||||| Sbjct 2272235 CCGTCAAAGTCTTTACGAAAATCTGCAT 2272208 Score = 172 bits (190), Expect = 1e-37 Identities = 163/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||||||| || ||||| || || ||||||||||||| ||| || | |||||| || | Sbjct 2272133 CAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAA 2272074 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 |||| ||||| ||||||||||| || || ||||| ||||| || || || ||||| |||| Sbjct 2272073 GCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAA 2272014 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || |||||| || || || ||||||||| ||||||||||| || | ||||| | Sbjct 2272013 TCTTCGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGC 2271954 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || ||||| | ||||| Sbjct 2271953 CCGTCAATGTCTTGACGAAGATCTGCAT 2271926 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || || || ||||| |||| ||| || | ||||| ||| Sbjct 2272701 ACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCG 2272642 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || ||||| || ||||| || || || ||||| || || || || Sbjct 2272641 AGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGG 2272582 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || || ||||| || || || || | ||| | ||||| Sbjct 2272581 ATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTG 2272522 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||| || || | ||||| Sbjct 2272521 CCAGTCAGGGTTTTCACAAAGATCTGCAT 2272493 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 || || || ||| |||||| ||||| |||||||| | ||| || | || || || | Sbjct 2272926 AGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAAT 2272867 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || || || || ||||| ||||| || || |||||||| ||||||||||| Sbjct 2272866 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2272807 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||| || || || || ||||||||| || || || | || | ||||| ||| Sbjct 2272806 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCT 2272747 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | ||||| Sbjct 2272746 GTGAGGGTCTTGACGAAGATCTGCAT 2272721 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || || |||||||| || || || || || ||||| || | | || | Sbjct 2271916 GAGGCGCAAGACGAGATGAAGAGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTACG 2271857 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 ||||| |||||||| || || ||||| || || ||||||||||| |||||||||| Sbjct 2271856 GCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGTTGTTGGTCGGGAGGAATGC 2271801 >seq6 Length=2247897 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 |||||||| || ||||| || || |||| |||||| | || |||||||||||||| || Sbjct 301068 GTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCC 301009 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| | || || ||||| || |||||||| || || |||||||| || ||| Sbjct 301008 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTC 300949 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || ||||| ||| || || || || |||| |||||| || || | || Sbjct 300948 ACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTC 300889 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 300888 TTGACGAAAATTTGCAT 300872 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 || ||||| || ||||| || || || || || || | ||| || | || || |||||| Sbjct 300508 AGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGC 300449 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || |||||||| | || || ||||| || || || ||||| ||||| ||||| Sbjct 300448 TGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATC 300389 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||| ||||| || |||||||||||| ||||| || ||||| | |||||| || Sbjct 300388 TTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCA 300329 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | ||||| Sbjct 300328 GTGAGGGTCTTCACGAAGATCTGCAT 300303 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||||||| ||| ||| || || |||||||| || | || || | || || |||| Sbjct 301583 CAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGA 301524 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || ||||| || || || || ||||| |||||||| ||||| ||||| |||| Sbjct 301523 GCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAA 301464 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || |||||| || || || ||||||||| || || || || || | ||||| | Sbjct 301463 TCTTCGCCTTGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTAC 301404 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || | || || || || | |||||| Sbjct 301403 CCGTGAGGGTCTTGACAAAGATCTGCATT 301375 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| || ||||| || || || | ||| || | || || ||||||||| Sbjct 300792 TGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGC 300733 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || || ||||| || || ||||| || ||||| || || || Sbjct 300732 TTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 300673 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||| || || ||||| || ||||| || || || | ||||||||| ||| Sbjct 300672 GCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTC 300613 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 300612 AACGTCTTCACGAAGATCTGCAT 300590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481400986738