Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 4e-18
seq6 104 2e-17
>seq1
Length=3258266
Score = 105 bits (116), Expect = 4e-18
Identities = 147/202 (73%), Gaps = 8/202 (4%)
Strand=Plus/Minus
Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844
||||| |||||||||||||| || |||||||| | || | || |||| || || ||
Sbjct 2272917 GTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCAATTGCTTGCCC 2272858
Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904
||||| || || ||||||||||| |||| | || |||||||| ||||||| ||
Sbjct 2272857 GCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATCTTCGCCTTC 2272798
Query 34905 ACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960
|| || ||||||| | ||| | ||| || || | || || || || || |||||
Sbjct 2272797 AC--AT--TATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCTGTGAG 2272742
Query 34961 AGTCTTCACAAAGATCTGCATA 34982
||||| || ||||||||||||
Sbjct 2272741 GGTCTTGACGAAGATCTGCATA 2272720
Score = 95.1 bits (104), Expect = 8e-15
Identities = 141/196 (72%), Gaps = 8/196 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| |||||| | || |||| || ||||| || || |||||
Sbjct 2272683 TCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAA 2272624
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || || || || | || | |||||||| || |||||| |||||| ||
Sbjct 2272623 ATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGAC--AT 2272566
Query 34911 GCTATCGATTCAC-CGGCC---TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
|||||||| ||| | || || || | ||| ||||| || || || || || ||
Sbjct 2272565 --TATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTT 2272508
Query 34967 CACAAAGATCTGCATA 34982
||||||||||||||||
Sbjct 2272507 CACAAAGATCTGCATA 2272492
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
||||||||||| || || || || || |||| |||| |||| ||| ||||| || ||
Sbjct 2272398 TCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2272339
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||||||||| | || | ||| |||||||| ||||||| || |||
Sbjct 2272338 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2272279
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || |||| || || || || ||||| | |||||| ||
Sbjct 2272278 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTACG 2272219
Query 34971 AAGATCTGCAT 34981
|| ||||||||
Sbjct 2272218 AAAATCTGCAT 2272208
Score = 84.2 bits (92), Expect = 1e-11
Identities = 138/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || || || ||||| | || |||| || |||||||| || || ||
Sbjct 2272116 TCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2272057
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||||||||||| ||||||| ||||| ||
Sbjct 2272056 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGAC--AT 2271999
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| | ||| | ||| || || | || ||||| || ||||| | |||||
Sbjct 2271998 --TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTT 2271941
Query 34967 CACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 2271940 GACGAAGATCTGCAT 2271926
>seq6
Length=2247897
Score = 104 bits (114), Expect = 2e-17
Identities = 161/226 (71%), Gaps = 12/226 (5%)
Strand=Plus/Minus
Query 34764 AACCTCAAA---ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCT 34819
||||||||| ||| || |||| || || ||||| |||||||||||||||||| |
Sbjct 300524 AACCTCAAACGCACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGT 300465
Query 34820 TCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCC 34879
|| | || || ||||| || || || || || | || |||||||| | || | ||
Sbjct 300464 GCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCC 300405
Query 34880 CTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACAT 34935
|||||||| ||||||| || || | ||||||| | ||| | ||| || |
Sbjct 300404 TTCCTTGTCCTGAATCTTCGCCTTCAC----GTTATCGATGGTGTCCGAAGACTCCACCT 300349
Query 34936 CGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| ||| || || || || ||||| |||||||| |||||||||||
Sbjct 300348 CGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 300303
Score = 102 bits (112), Expect = 5e-17
Identities = 154/214 (72%), Gaps = 9/214 (4%)
Strand=Plus/Minus
Query 34773 ACCAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
|||||| |||| ||||| || ||||| || || ||||| || ||| | || | || ||
Sbjct 301585 ACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTC 301526
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || || || || || || || |||||||| | || | ||| ||||||||
Sbjct 301525 GAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTG 301466
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947
||||||| ||||| || | ||||| | ||| | ||| || || | || || |
Sbjct 301465 AATCTTCGCCTTGAC--AT--TGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTG 301410
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || |||||||| ||||| ||||||||||||||
Sbjct 301409 TCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301376
Score = 96.9 bits (106), Expect = 2e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||||||||| |||||| | || | || || ||||| || || || ||
Sbjct 300780 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 300721
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 300720 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 300661
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| ||| | ||| || |||| || || || ||||| || | ||||||||
Sbjct 300660 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 300601
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 300600 AAGATCTGCAT 300590
Score = 93.3 bits (102), Expect = 3e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||||||||| | ||| |||| || || || || || || ||
Sbjct 301290 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAAA 301231
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| |||||| || |||
Sbjct 301230 ATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 301171
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| ||| | ||| || |||| || || || || || || || ||||| ||
Sbjct 301170 TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACG 301111
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 301110 AAGATCTGCAT 301100
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||||||||| ||||| | || | || || ||||| || || || ||
Sbjct 301062 TCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAG 301003
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || |||||||| | || | |||||||| || ||||||| || |||
Sbjct 301002 ATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTTCGCCTTCACGTTA 300943
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| ||| | ||| || |||| || || || || |||||||| ||||| ||
Sbjct 300942 TCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACG 300883
Query 34971 AAGATCTGCATA 34982
|| || ||||||
Sbjct 300882 AAAATTTGCATA 300871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633544609392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |