Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 190 2e-43 >seq3 Length=3164952 Score = 190 bits (210), Expect = 2e-43 Identities = 393/580 (68%), Gaps = 11/580 (2%) Strand=Plus/Minus Query 18942 AAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAA 19001 |||||| | |||| | ||| |||||||| ||| | || ||||| | ||| |||| Sbjct 1892497 AAGATGACTGAACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAG 1892438 Query 19002 TTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGC 19061 ||| |||||||| |||||||||||||| || |||| ||| || | |||||| || ||||| Sbjct 1892437 TTCGTTAGAAAAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGC 1892378 Query 19062 AAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA 19121 ||| ||||| || ||||| || |||||||| || || || || || | || || | Sbjct 1892377 AAAAGATCCGGAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCA-A 1892319 Query 19122 ACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATG 19180 || | | || | || ||||| | || ||||| || | ||||| || || |||| Sbjct 1892318 ACGTCGACCGTTGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATG 1892259 Query 19181 GCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCAT 19240 | || ||||| || ||||| || || ||||| | | || | || | || Sbjct 1892258 GTATAGTCTCGATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTAT 1892199 Query 19241 CTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAA 19300 | || | | | ||| |||| || ||||| ||||| || || |||||||| |||| Sbjct 1892198 CGATGAGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAA 1892139 Query 19301 AACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAA 19360 |||| | |||| | |||||||| || |||| | || |||| ||| || || | Sbjct 1892138 AACAGCGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGA 1892079 Query 19361 CTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATG------TTTTT 19414 | || || || ||| ||||||||||| | |||| | || ||||| || | Sbjct 1892078 CAATACCGTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGT 1892019 Query 19415 CATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTG 19474 ||| | |||||| | ||||| || |||||||| || | ||| | ||||| | Sbjct 1892018 CAT-TCAGGTTATCG--TTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACG 1891962 Query 19475 TCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATAT 19514 ||||||| ||||||| ||||| || ||||| | ||| || Sbjct 1891961 TCCAAAACGAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1891922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108701630960