Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 208 1e-48 >seq3 Length=3164952 Score = 208 bits (230), Expect = 1e-48 Identities = 380/555 (68%), Gaps = 5/555 (1%) Strand=Plus/Plus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| ||| || ||||| | |||| || ||||| || |||||||| | ||||||||| Sbjct 1890150 AGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAGAAG 1890209 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 ||| |||||||||| || | || || | |||||| |||| |||||||| || ||| Sbjct 1890210 GTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCGGAG 1890269 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG 48304 ||||| ||||||||||| || ||||| ||| | | ||| | || | | | Sbjct 1890270 AAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGACGA 1890329 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 || ||||||||| || |||||||| |||||| | |||| || || || ||||| | Sbjct 1890330 TCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACA 1890389 Query 48365 GCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCG 48424 || ||| || | || || | | |||| | || ||| || || | | Sbjct 1890390 GCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAGGGAG 1890449 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 || |||| ||| | ||| || || || ||||||||||||||| | |||||| Sbjct 1890450 TAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGCCTCA 1890509 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | |||| || || | ||||| | ||| | || ||||| ||||| || ||||| || Sbjct 1890510 GCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCAGAG 1890569 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC---- 48600 || ||||| || || |||||||| | || || ||||| |||| | | || || Sbjct 1890570 GCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAG-GCGGTT 1890628 Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 ||||||| | || | ||||| |||||||| ||||| |||||||||| ||||| Sbjct 1890629 ATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACGCTTC 1890688 Query 48661 TGCTTTTTTGTACAT 48675 |||||||||||||| Sbjct 1890689 AGCTTTTTTGTACAT 1890703 Score = 149 bits (164), Expect = 1e-30 Identities = 367/552 (66%), Gaps = 11/552 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 |||||||| || | |||| ||||||||||| || || || |||| || ||| | | Sbjct 1892478 CAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1892419 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || | | || |||||||| |||| || ||||| || ||||||||| Sbjct 1892418 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1892359 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAG--AAGCGTTCTTGTCTG 48308 || || || || ||||||||||| | |||| | || | | ||| | ||| | Sbjct 1892358 ATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT--TGGTCAG 1892301 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| || ||||| || | ||||| ||||| |||||| || ||||| || | Sbjct 1892300 AGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAAT 1892241 Query 48369 GGAAGAGCTTCTTGCACTCACCT--GCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 |||||| ||| | || | ||| | | |||||| || || | ||| Sbjct 1892240 TGAAGAG--GAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTA 1892183 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 | || ||||| | || || || ||| || || || || || | | | ||| Sbjct 1892182 TGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACTTCAGC 1892123 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGC 48546 | || ||||| | || || | ||||| ||||||||| ||||| || || || ||||| Sbjct 1892122 GGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGC 1892063 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATT 48603 ||||| || || ||||||| | | ||||||||| ||||||| | || | | || Sbjct 1892062 GGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTT 1892003 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | | |||||| || || | ||||| ||||| || || || | || Sbjct 1892002 CCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGC 1891943 Query 48664 TTTTTTGTACAT 48675 ||| |||||||| Sbjct 1891942 TTTCTTGTACAT 1891931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532636981760