Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 127 4e-24 >seq3 Length=3164952 Score = 127 bits (140), Expect = 4e-24 Identities = 372/567 (66%), Gaps = 11/567 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||| || ||| || || |||||| ||||||||||| || ||| Sbjct 1890712 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1890653 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | || || | ||| |||| | ||| || | | | | |||| || ||| || Sbjct 1890652 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTC 1890594 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | | || | || || ||||| ||||||||||| || || |||||||| || ||| | Sbjct 1890593 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1890534 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | || || ||| | ||||| || |||||||| ||||| || || Sbjct 1890533 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1890474 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTC- 25770 |||||| | ||| ||| || || ||| | ||| || ||||| | ||| Sbjct 1890473 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGAT-ACTTACATCAAGGACCCTA 1890415 Query 25771 -GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || | ||| | || || | ||| | ||| ||| ||| | |||| |||||||| Sbjct 1890414 AGCAACGCGAGTAC--CTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1890357 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 | ||||| | |||||| | | || | || |||| ||||| | || || Sbjct 1890356 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1890297 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||| || |||||||||||||| || ||| |||||| || || | ||||||||| | || Sbjct 1890296 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1890237 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || || ||| ||||| || |||||||| | |||||||| Sbjct 1890236 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1890177 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCT 26036 | || | || || || ||| |||| Sbjct 1890176 AATGCATACCGACTTCGCATGCTTGCT 1890150 Score = 123 bits (136), Expect = 5e-23 Identities = 375/567 (66%), Gaps = 17/567 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| ||||||||||||| || || || ||||| |||||||||| ||| || Sbjct 1891922 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1891981 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCC--AAAGAC---GAGCAGCATTT--TCT 25589 |||| || || || |||| ||| | | || || ||| || | ||||| | | Sbjct 1891982 TCCAAAGATATCTTCGACTGGAACGAT--AACCTGAATGACAACGAACGCCATTTCATAT 1892039 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 || || || ||||||| ||||| || || || ||||| || |||||||||||| || Sbjct 1892040 CA--TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1892097 Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | | || | || ||||| || || || | | ||||| || || || || || Sbjct 1892098 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCAT 1892157 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACG 25768 || ||||| | ||||| || || | || | ||| || ||||| | ||| Sbjct 1892158 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGAT-ACCTACATCTCTGAC- 1892215 Query 25769 TCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 || | | || | | | || || | | |||||| ||||| || ||||| |||| Sbjct 1892216 TCTCAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAG 1892275 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 | ||||||| | | ||||||| ||| | | ||||||| | | || |||| Sbjct 1892276 ACCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTG 1892335 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || || || || || || || ||||| ||| ||| || ||||| | ||||||||||| Sbjct 1892336 GCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1892395 Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 ||| | | | || | |||||| || | |||||| ||||| || || || ||||||| Sbjct 1892396 AAG-AAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGA 1892454 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCT 26033 || | || | |||||||||||| || Sbjct 1892455 AGGGATGCATACAGATTTTGCCTGTCT 1892481 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--T 26209 |||||||| || |||||| |||| ||||| |||| ||| || |||| |||||| | Sbjct 1889984 GGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATT 1889925 Query 26210 GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACA 26269 ||| || || || | | ||||| || | ||||| |||||||||||||| | | Sbjct 1889924 GCC--CTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGACATGA 1889867 Query 26270 TATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 | || ||| | |||||||||||||||||||| ||| |||| Sbjct 1889866 TCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1889827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844637452160