Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 4e-24
>seq3
Length=3164952
Score = 127 bits (140), Expect = 4e-24
Identities = 372/567 (66%), Gaps = 11/567 (2%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||| || ||| || || |||||| ||||||||||| || |||
Sbjct 1890712 ATCTGGCAAATGTACAAAAAAGCTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACCTG 1890653
Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
| || || | ||| |||| | ||| || | | | | |||| || ||| ||
Sbjct 1890652 TCAAAAGATCTCCACGACTGGAATAACCGCCTTAACGACA-ATGAGCGTCACTTTGTCTC 1890594
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
| | || | || || ||||| ||||||||||| || || |||||||| || ||| |
Sbjct 1890593 GCATGTCCTCGCGTTTTTTGCCGCCTCTGATGGCATCGTCAACGAGAACCTTGTTGAGCG 1890534
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
||| | | || || ||| | ||||| || |||||||| ||||| || ||
Sbjct 1890533 CTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAATTATGAT 1890474
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTC- 25770
|||||| | ||| ||| || || ||| | ||| || ||||| | |||
Sbjct 1890473 GGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGAT-ACTTACATCAAGGACCCTA 1890415
Query 25771 -GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829
|| | ||| | || || | ||| | ||| ||| ||| | |||| ||||||||
Sbjct 1890414 AGCAACGCGAGTAC--CTTTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGAAGGC 1890357
Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889
| ||||| | |||||| | | || | || |||| ||||| | || ||
Sbjct 1890356 GGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTAGTCGC 1890297
Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949
||| || |||||||||||||| || ||| |||||| || || | ||||||||| | ||
Sbjct 1890296 CTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGGTTGAA 1890237
Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009
| || || |||||| || || ||| ||||| || |||||||| | ||||||||
Sbjct 1890236 GAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGACGAGGG 1890177
Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCT 26036
| || | || || || ||| ||||
Sbjct 1890176 AATGCATACCGACTTCGCATGCTTGCT 1890150
Score = 123 bits (136), Expect = 5e-23
Identities = 375/567 (66%), Gaps = 17/567 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| ||||||||||||| || || || ||||| |||||||||| ||| ||
Sbjct 1891922 ATTTGGCAGATGTACAAGAAAGCCCAGGCTTCGTTTTGGACGTCCGAAGAGATCGATATG 1891981
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCC--AAAGAC---GAGCAGCATTT--TCT 25589
|||| || || || |||| ||| | | || || ||| || | ||||| | |
Sbjct 1891982 TCCAAAGATATCTTCGACTGGAACGAT--AACCTGAATGACAACGAACGCCATTTCATAT 1892039
Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649
|| || || ||||||| ||||| || || || ||||| || |||||||||||| ||
Sbjct 1892040 CA--TATGTCCTGGCATTTTTTGCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGA 1892097
Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709
| | || | || ||||| || || || | | ||||| || || || || ||
Sbjct 1892098 GCGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCAT 1892157
Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACG 25768
|| ||||| | ||||| || || | || | ||| || ||||| | |||
Sbjct 1892158 GATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGAT-ACCTACATCTCTGAC- 1892215
Query 25769 TCGCCG-AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827
|| | | || | | | || || | | |||||| ||||| || ||||| ||||
Sbjct 1892216 TCTCAGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAG 1892275
Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
| ||||||| | | ||||||| ||| | | ||||||| | | || ||||
Sbjct 1892276 ACCGAGTGGGCCCTCAGGTGGATCTCTGACCAACGGTCGACGTTTGCCACGAGGTTGGTG 1892335
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947
|| || || || || || || ||||| ||| ||| || ||||| | |||||||||||
Sbjct 1892336 GCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGGATCTTTTGCTTCAATCTTCTGGCTG 1892395
Query 25948 AAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006
||| | | | || | |||||| || | |||||| ||||| || || || |||||||
Sbjct 1892396 AAG-AAACGAGGTCTCATGCCTGGTTTAACCTTTTCTAACGAACTGATTAGTCGGGACGA 1892454
Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCT 26033
|| | || | |||||||||||| ||
Sbjct 1892455 AGGGATGCATACAGATTTTGCCTGTCT 1892481
Score = 98.7 bits (108), Expect = 2e-15
Identities = 119/160 (74%), Gaps = 4/160 (3%)
Strand=Plus/Minus
Query 26152 GGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--T 26209
|||||||| || |||||| |||| ||||| |||| ||| || |||| |||||| |
Sbjct 1889984 GGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATT 1889925
Query 26210 GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACA 26269
||| || || || | | ||||| || | ||||| |||||||||||||| | |
Sbjct 1889924 GCC--CTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGACATGA 1889867
Query 26270 TATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309
| || ||| | |||||||||||||||||||| ||| ||||
Sbjct 1889866 TCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGT 1889827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844637452160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |