Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 87.8 2e-12 seq3 84.2 3e-11 >seq9 Length=1691937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 13570 TGACGCGAACAAGGCGGGTACGGCACA---ATCTGGAAAGTGTACTCTCATTGTCACAGA 13626 |||||||||||| || || ||| | |||| || |||||||| ||| |||| || Sbjct 1421556 TGACGCGAACAACGCTGGGACGAGGAATGCATCT---AAATGTACTCTTATTCTCACTGA 1421500 Query 13627 GGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTA 13686 || ||||| || || |||| || |||||||| | |||||| || || ||| ||| Sbjct 1421499 AGGAGATTCTGCCAAGGCCCTTGCTGTTGCGGGATTGGGTGTCGTCGGGCGCGATAACTT 1421440 Query 13687 CGGTGTGTTCCCACTTCGCGGTAAA 13711 || || |||||||||||||||||| Sbjct 1421439 TGGAGTCTTCCCACTTCGCGGTAAA 1421415 >seq3 Length=3164952 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/135 (74%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 65064 TCGCTCC---TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTC 65120 ||||||| || || ||||| | | || || || ||||||||| || |||||||| Sbjct 1890326 TCGCTCCACATTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTC 1890267 Query 65121 CGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTT 65180 ||| || ||| | | || | |||||||||||||| || |||||||| || || ||| Sbjct 1890266 CGGTTCTTTCGCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTT 1890207 Query 65181 CTCAAATGAACTTAT 65195 ||| |||||||| || Sbjct 1890206 CTCCAATGAACTCAT 1890192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569495600320