Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 109 2e-18 >seq1 Length=3258266 Score = 109 bits (120), Expect = 2e-18 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | |||||||||||| || || ||| || || || ||||| ||||| || ||| Sbjct 3104796 TTGACGAGACGACGCTGAATGTATCCCGTTTCAGCAGTCTTCACAGCAGTATCGATAAGA 3104737 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAA 302702 || |||||||| |||| || |||||||| | ||||| ||| ||| ||||| | || | | Sbjct 3104736 CCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCTTGCGG-CGTGAGCCCACGAAGATA 3104678 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| | || ||||| || || |||||||| | |||| ||| || || || || || Sbjct 3104677 CGAGTTTTCCACGAATCCGCGGGCCTCGGGACTGTAGTCGTCCTTCGTGAAATGAGGTAG 3104618 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 |||| | | |||| | || |||||| ||| ||||| Sbjct 3104617 TGTCCGATGCCGGAAGCCAAAGGGTATACGCCGTCCTTCAAC 3104576 Score = 93.3 bits (102), Expect = 1e-13 Identities = 116/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 251835 CAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTT 251894 ||| || |||| |||||||| |||||||| ||||| ||||||||||| ||||| | Sbjct 1374199 CAGATGTCCGATCGTCATACGGGATGGAATAGCGTGGGGGTTGATGATGATATCGGGAGT 1374140 Query 251895 CAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTTTCCAATAGTTCC 251951 | || || ||||||||||||||||| ||||| | ||| || | || || || || Sbjct 1374139 AATGCCTTCGGCAGTGAAGGGCATATC---TTCCTGCCGATATGTGATACCGATGGTACC 1374083 Query 251952 CTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||| || || |||||||| ||||| || ||||| Sbjct 1374082 CTTCTGCCCATGACGAGACGCAAACTTGTCGCCAAT 1374047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817335992718