Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq6 102 7e-17
seq1 98.7 9e-16
>seq6
Length=2247897
Score = 102 bits (112), Expect = 7e-17
Identities = 150/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || ||||| || || | |
Sbjct 300303 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 300362
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| |||||||| || ||||| ||
Sbjct 300363 GACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCAG 300422
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||||||||||| || || || ||||| ||||| | | | | || || ||||||
Sbjct 300423 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAAC 300482
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTG 24913
|| || ||||| ||||| || || || ||||
Sbjct 300483 ATCCAGAAGGAGTCGACCCTTCATCTCGGTG 300513
Score = 100 bits (110), Expect = 3e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || ||| | || || || || || |||||||| || || | |
Sbjct 300590 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 300649
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||| ||||| || || || || || || ||
Sbjct 300650 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 300709
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || |||||||| || || || ||||| ||||| | | | | || || ||||||
Sbjct 300710 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAAC 300769
Query 24884 ATTCAAAAGGAATCGACACTACACTTGG 24911
||||| ||||| ||||| || || ||||
Sbjct 300770 ATTCAGAAGGAGTCGACCCTCCATTTGG 300797
>seq1
Length=3258266
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | ||||| || || || || || || || | || || || | ||
Sbjct 2272493 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2272552
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|||||| | || | || ||| |||||||| || || || || || || || ||||||
Sbjct 2272553 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2272612
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || | || ||||| || || ||||| |||||| | | | | || || || |||
Sbjct 2272613 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2272672
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| ||||| || ||| | || | || | ||||| ||
Sbjct 2272673 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2272719
Score = 87.8 bits (96), Expect = 2e-12
Identities = 146/210 (70%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | || || || || || || || ||||| || | |
Sbjct 2271926 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2271985
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || |||||||| ||
Sbjct 2271986 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2272045
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | ||||| || || |||||||| |||||| | | | | || ||||| ||
Sbjct 2272046 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2272105
Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT 24912
|| || ||||| || || || || ||||||
Sbjct 2272106 ATCCAGAAGGAGTCTACCCTTCACCTTGGT 2272135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897521267920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |