Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-17
seq6 98.7 8e-16
>seq1
Length=3258266
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| || || || || || || || ||||| | || ||||| ||| || || |||
Sbjct 2272128 TGAAGGGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGT 2272069
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| ||||| | || | | ||||| || || || |||||||| ||||| || ||| ||
Sbjct 2272068 TTACCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTG-AATCTT 2272010
Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
| |||||| | || | |||||| ||| || ||||||||||| || || ||||| ||
Sbjct 2272009 CGCCTTGACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGT 2271950
Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || ||||||||
Sbjct 2271949 CAATGTCTTGACGAAGATCTGCAT 2271926
>seq6
Length=2247897
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | ||| || || | ||| | ||||| || || ||||||||||| || | |
Sbjct 301098 CCTCCACGTAGACGAAGGACGAGATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAA 301039
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||| || ||||| || ||||| || | ||||| | ||||| ||||| |||
Sbjct 301038 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 300979
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|| ||||| || ||||| ||| || | || || | || | ||||||||| || ||
Sbjct 300978 ATGCCCTCCTTATCTTG-AATCTTCGCCTTCACGTTATCGATCGTGTCAGAAGACTCGAC 300920
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || ||||| || | ||| || || || || |||||
Sbjct 300919 CTCGAGCGTAATCGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 300872
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 29579 CCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGA 29638
||||||| || || || || || ||||||||||| || | || |||||| || ||||
Sbjct 300797 CCAAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGA 300738
Query 29639 GTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTA 29698
| || ||||| || | ||||| | ||||| || || || || ||||| ||||| || |
Sbjct 300737 GCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 300678
Query 29699 ATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758
|| ||||| | || | |||||||| || || || || || || || || |
Sbjct 300677 TCTTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTC 300618
Query 29759 CAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| || || || || || ||||||||
Sbjct 300617 CAGTCAACGTCTTCACGAAGATCTGCAT 300590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385219134271974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |