Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 2e-24
seq1 125 7e-24
>seq6
Length=2247897
Score = 127 bits (140), Expect = 2e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||| ||| ||||| |||||||| || || ||| ||| |||||||||||||||||
Sbjct 301573 GGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACC-GTCCTCGAGCTGCTTGC 301515
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||||| ||||||| ||||||||||||||||| || ||||||||||| ||||| ||
Sbjct 301514 CCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCT 301455
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | |||||| | | ||| || || | |||| || || || || || |
Sbjct 301454 TGACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGG 301395
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 301394 TCTTGACAAAGATCTGCAT 301376
Score = 123 bits (136), Expect = 2e-23
Identities = 150/202 (74%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| |||||||| || | ||| | | | |||||||| ||||||||
Sbjct 301296 GTCGACTCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCA-TCCTCGAGTTGCTTGCC 301238
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| ||||||| ||||||||||| || ||||| || |||||||| |||||| |||
Sbjct 301237 AGCGAAAATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTT 301178
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | |||||| | | ||| || |||| |||| || ||||| ||||| ||
Sbjct 301177 CACGTTGTCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGT 301118
Query 133643 TTTTACGAAAATCTGCATGGCT 133664
|| ||||| ||||||||| ||
Sbjct 301117 CTTGACGAAGATCTGCATGCCT 301096
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
||||| | ||| ||||| ||||| || || || || | ||| ||||||||||
Sbjct 300795 AAATGGAGGGTCGACTCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGC 300736
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||||||| | || | ||||||||||| || |||||||| |||||||| ||||
Sbjct 300735 TGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATC 300676
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||||| | || | |||||| | | |||||| |||| |||| || || ||
Sbjct 300675 TTGGCCTTGACGTTATCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCA 300616
Query 133635 GTCAGAGTTTTTACGAAAATCTGCATGGCT 133664
|||| || || ||||| ||||||||| ||
Sbjct 300615 GTCAACGTCTTCACGAAGATCTGCATGCCT 300586
Score = 114 bits (126), Expect = 1e-20
Identities = 150/208 (72%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||| ||||| ||||| || || || || | ||| ||||||||||||
Sbjct 300506 ATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 300447
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||||||| | || | |||||||||||||| ||||| ||||||||||| |||||
Sbjct 300446 CTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATCTT 300387
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | || | ||||| | | |||||| |||| ||||| || || || ||
Sbjct 300386 CGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGT 300327
Query 133637 CAGAGTTTTTACGAAAATCTGCATGGCT 133664
|| || || ||||| ||||||||| ||
Sbjct 300326 GAGGGTCTTCACGAAGATCTGCATGTCT 300299
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| ||||| || || || ||| | ||| ||| ||||||||
Sbjct 301075 ATGCAAGGTGGACTCCTTCTGAATGTTATAGTCGGAAAGAGTGCGGCCGTCTTCGAGCTG 301016
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||||||| | || | ||||||||||| || || ||||| ||||| || |||||
Sbjct 301015 CTTGCCCGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCTTGAATCTT 300956
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | || | |||||| | | ||| || |||| || | || ||||| ||
Sbjct 300955 CGCCTTCACGTTATCGATCGTGTCAGAAGACTCGACCTCGAGCGTAATCGTCTTGCCCGT 300896
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| || || |||||||| |||||
Sbjct 300895 GAGGGTCTTGACGAAAATTTGCAT 300872
>seq1
Length=3258266
Score = 125 bits (138), Expect = 7e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| |||||||||||| | |||| | ||||| ||||| || ||
Sbjct 2272123 GGTAGACTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACC 2272064
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||||||||| || |||||||| ||||| |||
Sbjct 2272063 AGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTT 2272004
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||| | | |||||| || | |||| ||| ||||| |||| ||
Sbjct 2272003 GACATTGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGT 2271944
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 2271943 CTTGACGAAGATCTGCATG 2271925
Score = 118 bits (130), Expect = 1e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||||||||| |||||||||||| | || | ||||| | |||||| ||
Sbjct 2272404 GTAGACTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCA 2272345
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | ||| |||||||||||||| || ||||||||||| ||||| |||
Sbjct 2272344 GCGAAGATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC 2272285
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | |||| ||||| | | ||| || |||| |||| || || || |||| |||
Sbjct 2272284 ACGTTGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTC 2272225
Query 133644 TTTACGAAAATCTGCATG 133661
||||||||||||||||||
Sbjct 2272224 TTTACGAAAATCTGCATG 2272207
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| | || | | | |||||||||||||||||
Sbjct 2272689 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCA-TCCTCGAGCTGCTTGCC 2272631
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| || ||||| || || || |||||||| ||||| || |||||| ||
Sbjct 2272630 CGCAAAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTT 2272571
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | ||| || || | ||||| ||| ||||| ||||| ||
Sbjct 2272570 GACATTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGT 2272511
Query 133643 TTTTACGAAAATCTGCAT 133660
||| || || ||||||||
Sbjct 2272510 TTTCACAAAGATCTGCAT 2272493
Score = 109 bits (120), Expect = 5e-19
Identities = 149/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514
||| | |||| ||||||||| || |||||||| | | ||| ||| |||||| |
Sbjct 2272924 ATGGAGGGTGCTCTCTTTCTGAATGTTGTAATC--CGAAAGTGTGCGACCGTCCTCCAAT 2272867
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||||||||| |||| || || |||||||| || ||||||||||||||||| |||
Sbjct 2272866 TGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAATC 2272807
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | |||||| | | ||| || || | |||| || |||||
Sbjct 2272806 TTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGCCT 2272747
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || || || ||||| ||||||||
Sbjct 2272746 GTGAGGGTCTTGACGAAGATCTGCAT 2272721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420715401360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |