Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 129 4e-25 seq6 87.8 1e-12 >seq1 Length=3258266 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33542 CCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCA 33601 ||| ||| || ||||||||||| || ||||||||||| || |||||||| |||| |||| Sbjct 2272928 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2272869 Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661 |||| || || |||||||||| || ||||| || |||| | ||||| ||||| || Sbjct 2272868 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2272809 Query 33662 TTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 | ||| |||| ||| || | ||||| || || || || | |||||| || || Sbjct 2272808 TCTTCGCCTTCA-CATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTG 2272750 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||||| | || || || |||||||||||| Sbjct 2272749 CCTGTGAGGGTCTTGACGAAGATCTGCATA 2272720 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || || |||||||||||||| || || | || ||||| || ||||| || || Sbjct 2272399 CTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAA 2272340 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| || ||||| || | || | ||||| ||||| ||| ||| ||| || | Sbjct 2272339 GATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC-ACGT 2272281 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| || || || || | |||||||| || || || || || |||| Sbjct 2272280 TGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTA 2272221 Query 33737 CAAAGATCTGCAT 33749 | || |||||||| Sbjct 2272220 CGAAAATCTGCAT 2272208 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || ||||||||||| || ||||| | || || | ||||| || || || Sbjct 2272117 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2272058 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | ||| || ||||| ||| ||| | | |||| Sbjct 2272057 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTC-GCCTTGACAT 2271999 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| || ||||| |||| ||||| || || || || || || || | Sbjct 2271998 TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGA 2271939 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 2271938 CGAAGATCTGCAT 2271926 >seq6 Length=2247897 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| || || |||||||| || || || ||||| || || || ||||| |||| | Sbjct 301586 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 301527 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 | | || || || || ||||| | |||||||| || | || | ||||| ||||| Sbjct 301526 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 301467 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 ||| ||| || | ||| ||| | ||||| || || || || | |||||| || Sbjct 301466 GAATCTTCGCCTTGA-CATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTC 301408 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| || | || || |||||||||||||| Sbjct 301407 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301376 Score = 84.2 bits (92), Expect = 1e-11 Identities = 153/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 33529 CTCAAACGTAACACCAA-ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGT 33587 |||||||| |||| | ||| || || ||| || || ||||| || || || || || Sbjct 300521 CTCAAACG---CACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGT 300465 Query 33588 GCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACC 33647 ||| |||| || | || || || || || |||||||||||||| || | || | || Sbjct 300464 GCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCC 300405 Query 33648 TTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAAC 33707 ||| ||||| ||| ||| |||| || | |||||| || ||||| || | Sbjct 300404 TTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAG 300345 Query 33708 CGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||||| || || || | || || || ||||||||||| Sbjct 300344 GGTGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 300303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703943914880