Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 4e-25
seq6 87.8 1e-12
>seq1
Length=3258266
Score = 129 bits (142), Expect = 4e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 33542 CCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCA 33601
||| ||| || ||||||||||| || ||||||||||| || |||||||| |||| ||||
Sbjct 2272928 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2272869
Query 33602 ATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAA 33661
|||| || || |||||||||| || ||||| || |||| | ||||| ||||| ||
Sbjct 2272868 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2272809
Query 33662 TTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720
| ||| |||| ||| || | ||||| || || || || | |||||| || ||
Sbjct 2272808 TCTTCGCCTTCA-CATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTG 2272750
Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||||| | || || || ||||||||||||
Sbjct 2272749 CCTGTGAGGGTCTTGACGAAGATCTGCATA 2272720
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
|||||| || || |||||||||||||| || || | || ||||| || ||||| || ||
Sbjct 2272399 CTCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAA 2272340
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
||||| || ||||| || | || | ||||| ||||| ||| ||| ||| || |
Sbjct 2272339 GATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTC-ACGT 2272281
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||||| || || || || | |||||||| || || || || || ||||
Sbjct 2272280 TGTCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTA 2272221
Query 33737 CAAAGATCTGCAT 33749
| || ||||||||
Sbjct 2272220 CGAAAATCTGCAT 2272208
Score = 84.2 bits (92), Expect = 1e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617
||| || || || ||||||||||| || ||||| | || || | ||||| || || ||
Sbjct 2272117 CTCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAA 2272058
Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677
|| | ||||||||| || | || | ||| || ||||| ||| ||| | | ||||
Sbjct 2272057 GATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTC-GCCTTGACAT 2271999
Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736
||| | ||||| || ||||| |||| ||||| || || || || || || || |
Sbjct 2271998 TGTCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGA 2271939
Query 33737 CAAAGATCTGCAT 33749
| |||||||||||
Sbjct 2271938 CGAAGATCTGCAT 2271926
>seq6
Length=2247897
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/212 (70%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598
|||||| || || |||||||| || || || ||||| || || || ||||| |||| |
Sbjct 301586 CACCAAGGTGAAGGGTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCT 301527
Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658
| | || || || || ||||| | |||||||| || | || | ||||| |||||
Sbjct 301526 CGAGCTGCTTGCCCGCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCT 301467
Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717
||| ||| || | ||| ||| | ||||| || || || || | |||||| ||
Sbjct 301466 GAATCTTCGCCTTGA-CATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTC 301408
Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
||||| || | || || ||||||||||||||
Sbjct 301407 TTACCCGTGAGGGTCTTGACAAAGATCTGCAT 301376
Score = 84.2 bits (92), Expect = 1e-11
Identities = 153/222 (69%), Gaps = 4/222 (2%)
Strand=Plus/Minus
Query 33529 CTCAAACGTAACACCAA-ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGT 33587
|||||||| |||| | ||| || || ||| || || ||||| || || || || ||
Sbjct 300521 CTCAAACG---CACCGAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGAAAGGGT 300465
Query 33588 GCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACC 33647
||| |||| || | || || || || || |||||||||||||| || | || | ||
Sbjct 300464 GCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAACGCTGCTGGTCGGGGGGGATTCC 300405
Query 33648 TTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAAC 33707
||| ||||| ||| ||| |||| || | |||||| || ||||| || |
Sbjct 300404 TTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAAGACTCCACCTCGAG 300345
Query 33708 CGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||||||| || || || | || || || |||||||||||
Sbjct 300344 GGTGATCGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 300303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703943914880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |