Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 5e-13 seq1 84.2 2e-11 >seq5 Length=2330625 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170 ||||| || || ||| ||| | ||| | || || || |||||||| | || ||| ||| Sbjct 511770 TAGATTCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACACGAGCTCAATTGAGGA 511711 Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATC 148230 | | || ||||| ||| || || || ||||| || || | || |||| Sbjct 511710 TTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCGGACATC 511651 Query 148231 ATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGC 148290 | | || || ||||||||| |||| || ||||||||||||| | || |||||| Sbjct 511650 AGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACGCGC 511591 Query 148291 ATGAGCATGTGCTGTGGTCGTTCGGCAAC 148319 |||| |||||||||||| ||||| || || Sbjct 511590 ATGATCATGTGCTGTGGACGTTCTGCGAC 511562 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170 ||||| || || ||| ||| | ||| | || || || |||||||| | || ||| ||| Sbjct 512367 TAGATTCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACACGAGCTCAATTGAGGA 512308 Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATC 148230 | | || ||||| ||| || || || ||||| || || | || |||| Sbjct 512307 TTGGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCGGACATC 512248 Query 148231 ATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGC 148290 | | || || ||||||||| |||| || ||||||||||||| | || |||||| Sbjct 512247 AGGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACGCGC 512188 Query 148291 ATGAGCATGTGCTGTGGTCGTTCGGCAAC 148319 |||| |||||||||||| ||||| || || Sbjct 512187 ATGATCATGTGCTGTGGACGTTCTGCGAC 512159 >seq1 Length=3258266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | ||| || ||| |||||||| || || | | Sbjct 2272686 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCA 2272627 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || ||||||||||| || || ||||| || ||||| || || ||| | Sbjct 2272626 AAAATAAGGCGCTGTTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCTTTGACA 2272567 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || || | || | || || |||||||| ||||| Sbjct 2272566 TTATCGATTGTGTCGGACGACTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTC 2272507 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 2272506 ACAAAGATCTGCAT 2272493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611116593040