Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 174 2e-37 seq7 86.0 9e-11 >seq3 Length=3164952 Score = 174 bits (192), Expect = 2e-37 Identities = 373/544 (69%), Gaps = 19/544 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||| | || || || || ||||| ||||| ||| | |||| Sbjct 1890713 GATCTGGCAAATGTACAAAAAAG-CTGAAGCGTCTTTCTGGACTGCCGAAGAGATGGACC 1890655 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | || |||| ||||| ||| | | |||| | ||||| || || Sbjct 1890654 TGTCAAAAGATCTCCACG----ACTGGAATAACCGCCTTAACGACAATGAGCGTCACTTT 1890599 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||||||| |||||| |||||| ||||||||||| ||||||||| | Sbjct 1890598 GTCTCGCATGTCCTCGCGTTTTTT-GCCGCCTCTGATGGCATCGTCAACGAGAACCTTGT 1890540 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| ||| ||||| || | | ||||| |||| || ||||||||||| || Sbjct 1890539 TGAGCGCTTCTCGAACGAGGTTCAGGCGGCTGAGGCGCGTTGCTTCTACGGGTTCCAAAT 1890480 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || ||||| |||||| || |||||||| || || ||||| || ||| ||||||| Sbjct 1890479 TATGATGGAAAATATCCACAGCGAGACCTACTCCCTTCTTATCGATACTTACATCAAGGA 1890420 Query 1456068 CCCGGTCGAGAAGGACCACCTCTTTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 ||| | || |||| ||||| || | || || | || | || | | | Sbjct 1890419 CCCTAAGCAACGCGAGTACCT-TTTCGATGCTGTTGAGACCATTCCCTGTGTCAAAAGGA 1890361 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||| |||||||| | |||||| | | | ||| ||| ||||| ||||| | Sbjct 1890360 AGGCGGACTGGGCACTACGCTGGATCTCCGA-TCGTCGCTCCACA-TTTGCTGAGCGATT 1890303 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 |||| ||| ||||| || |||||||| || ||||| || |||| | | ||||| || Sbjct 1890302 AGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTG 1890243 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCG 1456305 | | |||||||| ||||||||||| || | || ||| ||| ||| | |||||||| | Sbjct 1890242 GTTGAAGAAGCGTGGCCTCATGCCTGGAC-TCACCTTCTCCAATGAACTCATCAGTCGTG 1890184 Query 1456306 ACGA 1456309 |||| Sbjct 1890183 ACGA 1890180 Score = 125 bits (138), Expect = 1e-22 Identities = 366/548 (67%), Gaps = 23/548 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| | |||| || |||| || |||||||| |||| ||| |||| Sbjct 1891921 GATTTGGCAGATGTACAAGAAAGCCC-AGGCTTCGTTTTGGACGTCCGAAGAGATCGATA 1891979 Query 1455835 TCGGCGCCGACACGGTCCACTGG---GTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | || ||||| | |||| ||| |||| ||||||||||| Sbjct 1891980 TGTCCAAAGATATCTTCGACTGGAACGATAACCTGAATGACAACGAACGCCATTTCATAT 1892039 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 | ||||| || |||||| ||||| ||| || || || |||||| |||| | Sbjct 1892040 CATATGTCCTGGCATTTTTT-GCCGCTTCCGACGGTATTGTCAACGAGAATCTGGTGGAG 1892098 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || ||| || || || ||| | || | || | ||||| || || || ||| Sbjct 1892099 CGGTTTTCGAGCGAAGTACAAGCCGCTGAAGTCCGCTGTTTTTATGGATTTCAAATCATG 1892158 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || |||||||| ||||| ||||| ||||| ||||| ||||| |||||| || ||| | Sbjct 1892159 ATGGAAAACATTCACTCGGAAACATACTCTCTCCTCATCGATACCTACATCTCTGACTC- 1892217 Query 1456072 GTCGAGAAG---GACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || || || | || |||||| | ||||| || | || | || | | | ||| Sbjct 1892218 -TC-AGCAGCGTGGCCTCCTCTTCAATTCGATCGAGACTATACCATGCGTCAAGCAGAAG 1892275 Query 1456129 GCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 |||| ||||| | | ||||||| || | | || ||||| |||||| | || Sbjct 1892276 ACCGAGTGGGCCCTCAGGTGGATCTCTGACCA--ACGG--TCGAC-GTTTGCCACGAGGT 1892330 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTT 1456243 | || | || || || || || || ||||| ||||| || | || ||| | ||||| Sbjct 1892331 TGGTGGCGTTCGCGGCGGTAGAAGGGATCTTCTTCTCCGG-ATCTTTTGCTTCAATCTTC 1892389 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303 ||||| ||||| || || |||||||| ||| || |||| |||||| | || ||||| Sbjct 1892390 TGGCTGAAGAAACGAGGTCTCATGCCTGGT-TTAACCTTTTCTAACGAACTGATTAGTCG 1892448 Query 1456304 CGACGAAG 1456311 ||||||| Sbjct 1892449 GGACGAAG 1892456 Score = 120 bits (132), Expect = 4e-21 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTG 1456630 || || || | ||| || |||||||| |||| |||||||||||||||||| || ||| | Sbjct 1890002 CTTCCTGTAGGGCTGATTGGCATGAATGCCAA-GCTCATGTGCCAGTACATCGAGTTT-G 1889945 Query 1456631 TCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCG 1456690 | || ||||| |||||| || ||||| ||| | ||||||||| || | ||||| Sbjct 1889944 TTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAA-AAGCACTACAACGCGACAAACCCC 1889886 Query 1456691 TTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTG 1456750 ||| | ||||| ||||||| | |||| ||||||||||| || ||| || ||| Sbjct 1889885 TTCGACTTTATGGACATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGTG 1889826 Query 1456751 GC-GAGTACGCCAAGGCCGGCGTCACCGC 1456778 | || ||| | |||||||||||||| || Sbjct 1889825 TCGGATTACTCAAAGGCCGGCGTCACGGC 1889797 >seq7 Length=1601081 Score = 86.0 bits (94), Expect = 9e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 165765 TGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCG 165824 ||||||||| |||| ||||||||||||||| ||| | |||||||| | || |||| Sbjct 930545 TGGGGCGCCATCGGCGCGCGCACCACCGAGTCTCAGCTCCACCGCGAACTCGCCTCGGGT 930604 Query 165825 CTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTGGCGACGGCCCTCGAT 165884 | | | ||||| || |||||||| | |||||||||||||| | ||| |||| Sbjct 930605 GTCTCCTTCCCCATCGGGTTCAAAAATGGGACCGACGGCAGCGTCTCCGTCGCCGTCGAC 930664 Query 165885 GCCGTGCGCACTGCCGCCCAGCCACACACCTT 165916 ||| ||||| | || | | || ||| |||| Sbjct 930665 GCCATGCGCTCGTCCTCAAATCCGCACGCCTT 930696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809849674268