Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq3 167 3e-36
>seq3
Length=3164952
Score = 167 bits (184), Expect = 3e-36
Identities = 373/558 (67%), Gaps = 8/558 (1%)
Strand=Plus/Minus
Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676
||||| || || ||| | || || || | |||||| | |||||||||||| || |
Sbjct 1892478 CAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAAAAGGTTAAA 1892419
Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736
|||||||| ||||| || || || ||||| || || | |||||||||||| || ||||||
Sbjct 1892418 CCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCGGAGAAGAAG 1892359
Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT----ATG 39792
|| |||||||| || || || || || | ||| | ||| | | | || |
Sbjct 1892358 ATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCA-AACGTCGACCGTTGGTCAGA 1892300
Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
|||||| | | ||||| || | |||| ||| || || || || || || || | |||
Sbjct 1892299 GATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCGATCGAATT 1892240
Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
||||| | | | || | || ||||| || | ||| || |
Sbjct 1892239 GAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGAGAGTATGT 1892180
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
||| || || |||||||| ||| || |||||||| |||||||| | ||||||
Sbjct 1892179 TTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACTTCAGCGGC 1892120
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
|||||| || |||| | ||| ||| ||| || || || || || || ||||||
Sbjct 1892119 TTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCGGAAGCGGC 1892060
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA---TTCCA 40089
||||||||||| |||| | || |||| ||| | | ||| ||| |||||
Sbjct 1892059 AAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTATCGTTCCA 1892000
Query 40090 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTT 40149
||| ||||||||| || ||||| | ||||| | ||||||||||| |||| || ||
Sbjct 1891999 GTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCCTGGGCTTT 1891940
Query 40150 TTTGTACATGTTCCATAT 40167
|||||||| | ||| ||
Sbjct 1891939 CTTGTACATCTGCCAAAT 1891922
Score = 118 bits (130), Expect = 1e-21
Identities = 369/568 (65%), Gaps = 10/568 (2%)
Strand=Plus/Plus
Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667
|||| ||||| |||||||| ||| | ||||| || | ||| || | ||| || ||
Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206
Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727
|| |||||||||||||| || |||||||| || | ||| || || | || ||||| ||
Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266
Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC- 39786
|| ||||| ||||| || || || || || || || | || ||| | || || | |
Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGC-AAATGTGGAGCG 1890325
Query 39787 ---ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843
|| ||||| ||||||| || || ||| | || ||||| || || || ||
Sbjct 1890326 ACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTC 1890385
Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903
| ||||| || || || | || | | || || | || ||||| || | ||
Sbjct 1890386 AACAGCATCGAAAAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGATAAGAAG 1890445
Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963
|| | || ||||| ||||| ||| || || || ||||| || || | ||
Sbjct 1890446 GGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCGC 1890505
Query 39964 TTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATC 40023
|||| || ||||| | || | || | | || || || || || |||||
Sbjct 1890506 CTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCATC 1890565
Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA--- 40080
| ||||||||||| || | ||||| | ||| | |||| | || ||
Sbjct 1890566 AGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCAT-TGTCGTTAAGGC 1890624
Query 40081 -TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139
||||||||||| | || ||||||||| | || | ||||| || ||||| || ||||
Sbjct 1890625 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1890684
Query 40140 CCTCTGCCTTTTTGTACATGTTCCATAT 40167
| || || ||||||||||| | ||| ||
Sbjct 1890685 CTTCAGCTTTTTTGTACATTTGCCAGAT 1890712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908679790960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |