Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq3 120 4e-22
seq1 82.4 9e-11
>seq3
Length=3164952
Score = 120 bits (132), Expect = 4e-22
Identities = 336/506 (66%), Gaps = 15/506 (3%)
Strand=Plus/Plus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
||||||||||| |||||||||||| |||||| || || |||||||| || ||||||
Sbjct 1890177 CCCTCGTCACGACTGATGAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGGCCACGCTTC 1890236
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
||||||||||| || | || || || |||||||| || ||||||||| |||||
Sbjct 1890237 TTCAACCAGAAGATTGAGGCGAAAGAACCGGAGAAGAAAATGCCCTCCACAGCGGCGAAG 1890296
Query 130154 GCAAAGAGACGCTCAGCAAA---GGAGCGGGAC-TTTGTATCAAACCACTTCATCGCCCA 130209
|| | | ||||||||||| ||||| ||| | | | | ||| | |||||
Sbjct 1890297 GCGACTAATCGCTCAGCAAATGTGGAGC--GACGATCGGA--GATCCAGCGTAGTGCCCA 1890352
Query 130210 CTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTT 130268
| |||||| | | || ||| || | ||||| | || || || || | || | ||
Sbjct 1890353 GTCCGCCTTCCTTTTGACACAGGGAATGGTCTCAACAGCATCGAAAAGGTACTCGCGTTG 1890412
Query 130269 CTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTT 130328
|| | || || |||||||| |||| || || || || || |||| |||| |||
Sbjct 1890413 CTTA-GGGTCCTTGATGTAAGTATCGATAAGAAGGGAGTAGGTCTCGCTGTGGATATTTT 1890471
Query 130329 -CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCA 130387
||| || || || ||||||| | ||||| || ||| ||||| | |
Sbjct 1890472 CCATCAT-AATTTGGAACCCGTAGAAGCAACGCGCCTCAGCCGCCTGAACCTCGTTCGAG 1890530
Query 130388 AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATA 130447
|| | | | ||||| || || ||||| || | ||||||||||| |||| |
Sbjct 1890531 AAGCGCTCAACAAGGTTCTCGTTGACGATGCCATCAGAGGCGGCAAAAAACGCGAGGACA 1890590
Query 130448 TACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGATCCTTC 130504
| | | || | | ||||| ||||| | || | |||||||||| ||||| ||
Sbjct 1890591 TGCGAGACAAAGTGACGCTCATTGTCGTTAAGGCGGTTATTCCAGTCGTGGAGATCTTTT 1890650
Query 130505 GAGAGATCTACCTCCTCCGCAGTCCA 130530
|| || || | ||| || ||||||||
Sbjct 1890651 GACAGGTCCATCTCTTCGGCAGTCCA 1890676
>seq1
Length=3258266
Score = 82.4 bits (90), Expect = 9e-11
Identities = 215/324 (66%), Gaps = 13/324 (4%)
Strand=Plus/Plus
Query 14151 CAAAGCCATCCATCTCAGTCAAG-AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209
|||| ||||||||||| | |||| || || |||| || ||||| || || ||| ||
Sbjct 2089675 CAAAACCATCCATCTC-GACAAGGAGCTGGTTGAGCGTCGACTCGCGCTCGTCGTTCCCA 2089733
Query 14210 GGCATA---CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266
||| || ||| | |||| |||||||| |||||||||||| |||||||| | |
Sbjct 2089734 CCCATGTTGCCTCCCTTTCCGCGTGACTTACCGATGGCGTCAATTTCGTCGATGAAGATG 2089793
Query 14267 ATACATGG----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACC 14322
|| || || || | ||| ||| | | || | || || || | | || |||
Sbjct 2089794 ATGCAAGGGGCATTTTTCTTCGCGGAC----GCGAAAAGGTCGCGTACACGCGAGGAACC 2089849
Query 14323 GACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGA 14382
||||| || |||||||| || || | || |||| || ||| |||||| | |
Sbjct 2089850 AACACCGACGAACATCTCGACGAATTCGGAACCGGAGACGGAGAGGAAAGGGACGCTCGC 2089909
Query 14383 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAG 14442
||| || ||| |||| || || | ||||| || || || || || | ||| |
Sbjct 2089910 TTCGCCGGCGGTGGCCTTAGCAAGTAACGTCTTTCCTGTACCAGGAGGTCCGGAGAGGAT 2089969
Query 14443 GGCACCACGTGGGATCCTGGCACC 14466
|||||| || |||||| | || ||
Sbjct 2089970 GGCACCGCGAGGGATCTTAGCCCC 2089993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618435091773840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |