Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 seq5 96.9 4e-15 >seq3 Length=3164952 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 |||||||||||| | |||| || || ||| ||||| || |||||||| ||||| ||| Sbjct 1890316 TTTGCTGAGCGATTAGTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTC 1890257 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | | || | ||| | |||||||| || |||||||| || ||| ||||||||| || Sbjct 1890256 GCCTCAATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAA 1890197 Query 94918 CTTATCTCTCGTGACGAGGGA 94938 || ||| ||||||||||||| Sbjct 1890196 CTCATCAGTCGTGACGAGGGA 1890176 >seq5 Length=2330625 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/228 (70%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || ||||| | || | |||||| |||| ||||| |||| || |||| || || Sbjct 512516 GGTACCAATGGATACTCCAACGGTATTGTTCCCATGCTCCGCGCATACGACGCGACTGCT 512575 Query 104573 CGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 |||||||| |||||| || ||| | ||| || | ||| ||||||||||| Sbjct 512576 CGCTATGTCGATCAAGGCGGTAACAAGCGCCC---GGGTGCTTTTGCAATCTATCTTGAG 512632 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 ||||||||||| |||||| || ||| | || | ||| || || || | ||||| Sbjct 512633 CCATGGCACGCCGATATCTACGAATTCATCGACCTCCGTAAAAATCACGGCAAGGAGGAA 512692 Query 104687 GCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 | | |||| ||||| ||||||| || |||||||| || ||||| || Sbjct 512693 G-TCCGTGCACGCGACCTCTTCTATGCGCTCTGGATCCCCGATCTTTT 512739 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/227 (70%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || ||||| | || |||||||| |||| ||||| |||| | || | || || Sbjct 514557 GGTACCAATGGATATTCTAATGGTATTGTTCCCATGCTCCGCGCGTACAATGAGACTGCT 514616 Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGAAA----GGGATCTATCGCAGTCTATCTTGAGCC 104628 |||||||| |||||| || | || ||| || ||||| ||||| ||||||| Sbjct 514617 CGCTATGTCGATCAAGGCGGTAA-CAAACTCCCGGGCGCTTTCGCAATCTATATTGAGCC 514675 Query 104629 ATGGCACGCGGATATCAT-GGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 |||||| || |||| ||| |||||| |||| | ||| ||||| || | ||||| | Sbjct 514676 ATGGCATGCCGATA-CATATGAGTTCGTTGACCTCCGTAAAAACCACGGCAAGGAGGAAG 514734 Query 104688 CGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 | |||| || || ||||||| || || ||||| || ||||| || Sbjct 514735 TTC-GTGCACGTGACCTCTTCTATGCACTTTGGATCCCCGATCTTTT 514780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260697929360