Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 105 7e-18 seq3 96.9 4e-15 >seq5 Length=2330625 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || || || |||||||| || || |||||||||||| ||| | ||||| | ||| Sbjct 512739 AAAAGATCGGGGATCCAGAGCGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 512680 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 || || ||| || |||| || || ||| ||||||||||| ||||| |||||||| Sbjct 512679 TGATTTTTACGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGATAGATT 512620 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | |||| ||||||| ||||| || | ||| || || || || || | | Sbjct 512619 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGATCGACATAGCGAGCAGTCGCGTCGTAT 512560 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGG 79594 | ||||||||||| || || |||| || Sbjct 512559 GCGCGGAGCATGGGAACAATACCGTTGG 512532 Score = 104 bits (114), Expect = 3e-17 Identities = 179/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709 || ||| ||||| || | | |||| ||| || || | |||||| || || ||||| Sbjct 511825 GAGTCCAATGCCACCAGCCGTCTTGCTGATCATGGCACAGTTCTTGAGAGTTTCATAGAT 511766 Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATC---TGTGGGTT 79766 ||||| || ||||| || ||||| |||||||| || ||| || || || || Sbjct 511765 TCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACA---CGAGCTCAATTGAGGATT 511709 Query 79767 GTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTCATCA 79825 | ||||| ||||||||||| || || | ||||| |||||| ||| || || ||||| Sbjct 511708 GGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCGG-ACATCA 511650 Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885 | | ||| || || | |||| || || ||||||| |||||||| || ||||||| Sbjct 511649 GGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACGCGCA 511590 Query 79886 TGAAGAGGTACTgggg 79901 ||| | || ||| || Sbjct 511589 TGATCATGTGCTGTGG 511574 Score = 104 bits (114), Expect = 3e-17 Identities = 179/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709 || ||| ||||| || | | |||| ||| || || | |||||| || || ||||| Sbjct 512422 GAGTCCAATGCCACCAGCCGTCTTGCTGATCATGGCACAGTTCTTGAGAGTTTCATAGAT 512363 Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATC---TGTGGGTT 79766 ||||| || ||||| || ||||| |||||||| || ||| || || || || Sbjct 512362 TCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACA---CGAGCTCAATTGAGGATT 512306 Query 79767 GTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTCATCA 79825 | ||||| ||||||||||| || || | ||||| |||||| ||| || || ||||| Sbjct 512305 GGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCGG-ACATCA 512247 Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885 | | ||| || || | |||| || || ||||||| |||||||| || ||||||| Sbjct 512246 GGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACGCGCA 512187 Query 79886 TGAAGAGGTACTgggg 79901 ||| | || ||| || Sbjct 512186 TGATCATGTGCTGTGG 512171 Score = 104 bits (114), Expect = 3e-17 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244 |||||| |||| ||||||||||| |||||||| || |||||| ||||| | ||||| Sbjct 514114 CGCGTG--CGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCA 514057 Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304 | || | |||| | | || |||| || || | || ||| || || || |||||| Sbjct 514056 TGCTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGC 513997 Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364 |||| |||| || ||||| || || | ||| | ||| ||| |||| |||||||||| Sbjct 513996 AGATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCCCAGA 513937 Query 78365 TGGTCCGGTAAATGGCCTT 78383 |||| || || ||||| Sbjct 513936 CGGTCTTATAGATCGCCTT 513918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || |||||| || || | |||||| ||||| ||| | |||||||| | | ||| | | Sbjct 513913 ACGTCAAGGCGATCTATAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTTCTTGACCTCG 513972 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | || || || || || | |||| |||||| || || || || ||| | || || || Sbjct 513973 CTGCGGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTC 514032 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795 ||| || | |||| | | |||||| | ||||||||| | ||||||||||| | Sbjct 514033 CGACGCTCGGCCAGCTCACCAGCATGCACTTTTACGGCTGGAAGCGTGGGCTCAAGACCG 514092 Query 20796 GCATGTACTATCTGCGGACCCG 20817 |||||||||| ||||| || || Sbjct 514093 GCATGTACTACCTGCGCACGCG 514114 >seq3 Length=3164952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCT---CATGGCCCAGTTTGGAGAAGGACCAATT 60332 |||||||| ||||||| || ||||| || ||| |||| ||| ||| | || | Sbjct 1889960 CAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAAA-AGCACT- 1889903 Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392 || || || ||||| ||||||| ||||| | ||||| ||| | |||||||||||| Sbjct 1889902 -ACAACGCGACAAACCCCTTCGACTTTATGGACATGATCTCTTTGCAGGGGAAGACCAAC 1889844 Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 ||||||||||||||||| |||||| |||||| Sbjct 1889843 TTCTTTGAGAAGCGGGTGTCGGATTACTCAAAG 1889811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524704008160