Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq5 105 7e-18
seq3 96.9 4e-15
>seq5
Length=2330625
Score = 105 bits (116), Expect = 7e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446
|| || || |||||||| || || |||||||||||| ||| | ||||| | |||
Sbjct 512739 AAAAGATCGGGGATCCAGAGCGCATAGAAGAGGTCGCGTGCACGGACTTCCTCCTTGCCG 512680
Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506
|| || ||| || |||| || || ||| ||||||||||| ||||| ||||||||
Sbjct 512679 TGATTTTTACGGAGGTCGATGAATTCGTAGATATCGGCGTGCCATGGCTCAAGATAGATT 512620
Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566
|| || | |||| ||||||| ||||| || | ||| || || || || || | |
Sbjct 512619 GCAAAAGCACCCGGGCGCTTGTTACCGCCTTGATCGACATAGCGAGCAGTCGCGTCGTAT 512560
Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGG 79594
| ||||||||||| || || |||| ||
Sbjct 512559 GCGCGGAGCATGGGAACAATACCGTTGG 512532
Score = 104 bits (114), Expect = 3e-17
Identities = 179/256 (70%), Gaps = 8/256 (3%)
Strand=Plus/Minus
Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709
|| ||| ||||| || | | |||| ||| || || | |||||| || || |||||
Sbjct 511825 GAGTCCAATGCCACCAGCCGTCTTGCTGATCATGGCACAGTTCTTGAGAGTTTCATAGAT 511766
Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATC---TGTGGGTT 79766
||||| || ||||| || ||||| |||||||| || ||| || || || ||
Sbjct 511765 TCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACA---CGAGCTCAATTGAGGATT 511709
Query 79767 GTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTCATCA 79825
| ||||| ||||||||||| || || | ||||| |||||| ||| || || |||||
Sbjct 511708 GGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCGG-ACATCA 511650
Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885
| | ||| || || | |||| || || ||||||| |||||||| || |||||||
Sbjct 511649 GGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACGCGCA 511590
Query 79886 TGAAGAGGTACTgggg 79901
||| | || ||| ||
Sbjct 511589 TGATCATGTGCTGTGG 511574
Score = 104 bits (114), Expect = 3e-17
Identities = 179/256 (70%), Gaps = 8/256 (3%)
Strand=Plus/Minus
Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709
|| ||| ||||| || | | |||| ||| || || | |||||| || || |||||
Sbjct 512422 GAGTCCAATGCCACCAGCCGTCTTGCTGATCATGGCACAGTTCTTGAGAGTTTCATAGAT 512363
Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATC---TGTGGGTT 79766
||||| || ||||| || ||||| |||||||| || ||| || || || ||
Sbjct 512362 TCCCTCAATGGAGTCATCTTTCATGCAAACCAGGAAACA---CGAGCTCAATTGAGGATT 512306
Query 79767 GTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG-AACTTTTGGCTCATCA 79825
| ||||| ||||||||||| || || | ||||| |||||| ||| || || |||||
Sbjct 512305 GGGTGTACCCGCGTTGAAGAGTGTTGGTGAGGCGTGAGTGAAGTAACGTTCGG-ACATCA 512247
Query 79826 GATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCA 79885
| | ||| || || | |||| || || ||||||| |||||||| || |||||||
Sbjct 512246 GGTTGTAGGTTTCAATAGCGCGATCGACATCAGCGCCGTGAATGCCGACAGCTACGCGCA 512187
Query 79886 TGAAGAGGTACTgggg 79901
||| | || ||| ||
Sbjct 512186 TGATCATGTGCTGTGG 512171
Score = 104 bits (114), Expect = 3e-17
Identities = 143/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 78185 CGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCA 78244
|||||| |||| ||||||||||| |||||||| || |||||| ||||| | |||||
Sbjct 514114 CGCGTG--CGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCA 514057
Query 78245 TACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGT 78304
| || | |||| | | || |||| || || | || ||| || || || ||||||
Sbjct 514056 TGCTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGC 513997
Query 78305 CGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGA 78364
|||| |||| || ||||| || || | ||| | ||| ||| |||| ||||||||||
Sbjct 513996 AGATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCCCAGA 513937
Query 78365 TGGTCCGGTAAATGGCCTT 78383
|||| || || |||||
Sbjct 513936 CGGTCTTATAGATCGCCTT 513918
Score = 98.7 bits (108), Expect = 1e-15
Identities = 143/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675
|| |||||| || || | |||||| ||||| ||| | |||||||| | | ||| | |
Sbjct 513913 ACGTCAAGGCGATCTATAAGACCGTCTGGGAGATCTCGCAGAAGAGGGTTCTTGACCTCG 513972
Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735
| || || || || || | |||| |||||| || || || || ||| | || || ||
Sbjct 513973 CTGCGGACCGTGGAGCGTTCATCTGCCAGTCACAATCTCTAAACGTCCACTTGCAGTCTC 514032
Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGG 20795
||| || | |||| | | |||||| | ||||||||| | ||||||||||| |
Sbjct 514033 CGACGCTCGGCCAGCTCACCAGCATGCACTTTTACGGCTGGAAGCGTGGGCTCAAGACCG 514092
Query 20796 GCATGTACTATCTGCGGACCCG 20817
|||||||||| ||||| || ||
Sbjct 514093 GCATGTACTACCTGCGCACGCG 514114
>seq3
Length=3164952
Score = 96.9 bits (106), Expect = 4e-15
Identities = 115/153 (75%), Gaps = 6/153 (4%)
Strand=Plus/Minus
Query 60276 CAGTACATTCAGTTTGTCGCGGACCGCCT---CATGGCCCAGTTTGGAGAAGGACCAATT 60332
|||||||| ||||||| || ||||| || ||| |||| ||| ||| | || |
Sbjct 1889960 CAGTACATCGAGTTTGTTGCAGACCGTCTGCTCATTGCCCTCGGTGGCGAAA-AGCACT- 1889903
Query 60333 TACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAAC 60392
|| || || ||||| ||||||| ||||| | ||||| ||| | ||||||||||||
Sbjct 1889902 -ACAACGCGACAAACCCCTTCGACTTTATGGACATGATCTCTTTGCAGGGGAAGACCAAC 1889844
Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425
||||||||||||||||| |||||| ||||||
Sbjct 1889843 TTCTTTGAGAAGCGGGTGTCGGATTACTCAAAG 1889811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524704008160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |