Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 178 1e-39 seq1 156 5e-33 seq8 98.7 1e-15 seq5 95.1 1e-14 seq3 84.2 2e-11 >seq6 Length=2247897 Score = 178 bits (196), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| | Sbjct 301100 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 301159 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| || || || |||||| Sbjct 301160 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 301219 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| |||||||||||||||| || || || | ||||| ||| Sbjct 301220 CAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAAT 301279 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || ||||||||||| Sbjct 301280 ATCCAGAAGGAGTCGACTCTTCATCT 301305 Score = 161 bits (178), Expect = 1e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || || || ||||| ||||| Sbjct 301375 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 301434 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || |||||||||||||| || |||||||| ||||| Sbjct 301435 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 301494 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || ||||| || || ||||| |||||||| | ||| ||||| | ||||| || Sbjct 301495 GCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 301554 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611 | |||| ||||| ||| ||||| || Sbjct 301555 TATCCAGAAGGAGAGCACCCTTCACCT 301581 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || || || ||||| ||||| Sbjct 300303 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 300362 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || |||||||||||||| ||||| || || |||||| Sbjct 300363 GACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCAG 300422 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| |||||||| | || ||||| | |||||||| Sbjct 300423 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAAC 300482 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || |||||||| Sbjct 300483 ATCCAGAAGGAGTCGACCCTTCATCT 300508 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 300872 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300931 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||| || |||||||| ||||| || |||||| Sbjct 300932 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300991 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| ||||| || | || || || | |||||||| Sbjct 300992 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 301051 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| | ||||| ||| | ||||| || || || Sbjct 301052 ATTCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGTCTACGTGGAGG 301098 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || || ||||| || || || ||||| |||||| | Sbjct 300590 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 300649 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 300650 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 300709 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||| | || ||||| | |||||||| Sbjct 300710 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAAC 300769 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 | || ||||| || || || ||| Sbjct 300770 ATTCAGAAGGAGTCGACCCTCCAT 300793 >seq1 Length=3258266 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || |||||||| || |||||||| || ||||| Sbjct 2271926 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2271985 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||||||||| || ||||| |||||| Sbjct 2271986 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2272045 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || |||||||| || || ||||||| || || || | || || ||| Sbjct 2272046 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2272105 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || ||||| || Sbjct 2272106 ATCCAGAAGGAGTCTACCCTTCACCT 2272131 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || | ||||| ||||| Sbjct 2272493 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2272552 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || ||||| |||||||| || || || || || Sbjct 2272553 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2272612 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| || ||||| |||||||||| || ||||| | ||||| || Sbjct 2272613 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2272672 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || ||| | ||||||||||| || Sbjct 2272673 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2272719 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || ||||| || ||||| ||||| ||||| Sbjct 2272208 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2272267 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||||| || |||||||||||||| || |||||||| |||||| Sbjct 2272268 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2272327 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || ||||| ||||| | ||||||| || || || | || || ||| Sbjct 2272328 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAT 2272387 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || || || || ||| | || || Sbjct 2272388 ATTCAGAAAGAGTCTACTTTGCACCT 2272413 Score = 109 bits (120), Expect = 6e-19 Identities = 184/282 (65%), Gaps = 52/282 (18%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || |||||||||||||| || |||||||||||||| Sbjct 2271643 ATCATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACTATCACGCTTGAGGTTGAGTCT 2271702 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG-------------- 27508 |||| ||| | ||| | ||||| || |||||||| ||||||| Sbjct 2271703 TCCGATACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGTGGGTCCCTCAC 2271762 Query 27509 --------------------------------------GAATTCCTCCAGACCAGCAGCG 27530 | |||||||| ||||| || || Sbjct 2271763 GACGTGATCCCTGGCTTCATATCACTCATAGTCGCTTAGCATTCCTCCCGACCAACAACG 2271822 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 ||| ||||| ||||| || || |||||||||| ||||| | | ||||| || |||| Sbjct 2271823 TCTCATTTTCGCTGGAAAACAGCTCGAGGATGGCCGTACATTGTCTGACTACAACATCCA 2271882 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| ||||||||||| |||||||| || || || || Sbjct 2271883 GAAGGAATCGACTCTTCATCTCGTCTTGCGCCTCCGTGGCGG 2271924 >seq8 Length=1872454 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||||||||| || |||||||| || ||||| ||||| || | ||| ||| Sbjct 434559 ATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCACC 434500 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| || ||||| |||||||||| || || || || || ||| | ||||| ||||| Sbjct 434499 CTCAGC-GATTATAACATCCAAAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGCGG 434441 Query 27630 TGG 27632 ||| Sbjct 434440 TGG 434438 >seq5 Length=2330625 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| ||||| ||||||||||| |||||||| || |||||||||||| | |||||| Sbjct 514114 CGCGTGCGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCATG 514055 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 |||||| | || || || || || | || ||| ||||| || ||||| ||| Sbjct 514054 CTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGCAG 513995 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214 ||||| || ||||| || || || | |||| || ||| || | || ||||| || Sbjct 513994 ATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCCCAGACG 513935 Query 80215 GT 80216 || Sbjct 513934 GT 513933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 308/477 (65%), Gaps = 6/477 (1%) Strand=Plus/Minus Query 80538 ACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||| | ||| ||||| | ||| || ||||| || || | | | | | ||| Sbjct 513550 ACCCCAAAGGTCAAATTGCAACAAGCCTTCGGACGCAGGGCTGCCAGAGTAGGACGAGTA 513491 Query 80598 CGGGCCCTCCGTCTTGGCCAGCTC-ACACGAC--TCCATAAGGGCCGCGTGATAAATGCA 80654 |||||| || ||| |||| ||| |||| | |||| | || || || || || Sbjct 513490 CGGGCCATCTTTCTCAGCCATCTCGACACTAGCTTCCACA---GCGGCATGGTATATTGT 513434 Query 80655 CTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCAT 80714 ||| |||| || |||| ||||||||| || || | || || || || Sbjct 513433 CTCGAAGATCTGCTGATTCAGCTTGCGCGCCTGCTCTGATTCAAAAGGCATGCGCAAGAT 513374 Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| || || || ||||| ||||||| | || |||||||| ||| |||| || Sbjct 513373 CATGAAAGTATCCGCAAGACCCTGCACGCCGAGACCAATAGGGCGGTGACGCATGTTGGA 513314 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 | ||| |||| ||||| |||| ||||||| |||||||||||| | Sbjct 513313 ATTACGTGACTCAGGAACGGGGTAGTAGTTGACGTCGATGATACGGTTCAGGTTGAAGGC 513254 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGC 80894 |||||| | ||| | |||||||| || |||||| || | |||| || | | Sbjct 513253 CACAACCTTGGCGACAGCGTGAAGTTTATGGAAGTCGTATACGCCATCCTTGACGTAAGT 513194 Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGAC 80954 ||||| ||||| || || ||||| || || ||| || | | | | |||| Sbjct 513193 AGGAAGCGCAAGGGAAGCAAGGTTGCAGACTGCGGTCTCATCTGGAGAAGAGTATTCGAT 513134 Query 80955 GATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||| || ||||| | ||| ||||| || || || || || || || ||||| || || Sbjct 513133 GATCTCAGTGCATAGATTGGAAGATTTGATCGTCCCGAGATTCTTTTGGTTAGATTT 513077 >seq3 Length=3164952 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 64666 AAGGCTGAATGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCGTTTGGTCAGCGTCTC 64722 ||||| || ||||| | || ||||| ||||| | || | |||| | |||| | Sbjct 1890361 AAGGCGGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTA 1890302 Query 64723 GCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGG 64782 | || || ||| |||||| || |||||||| || || || ||| || || |||||| Sbjct 1890301 GTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGG 1890242 Query 64783 CTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGAC 64842 | || ||||| ||||| ||||| || || | || || || || || ||| ||| ||| Sbjct 1890241 TTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGAC 1890182 Query 64843 GAGGGGCTCCACCAAGAATTTGC--GGTTACCCTGTTCAGCCACCTCAAG 64890 ||||| | || || || || | || | |||||||||| |||||| Sbjct 1890181 GAGGGAATGCATACCGACTTCGCATGCTTGC--TGTTCAGCCATCTCAAG 1890134 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/185 (71%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 64981 CTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGATCGCCTG 65040 |||||||| ||| |||||| |||| || || || |||||||| || ||||||||| Sbjct 1892641 CTCATCGGAATGAATGCCGCCCTGATGCGTCAATACATAGAATTTGTCGCTGATCGCCTG 1892700 Query 65041 CTT-ACTCAGTTTGGTATT--AAGCCCTACTGGAATTCTTCAAATCCATTTGACTGGATG 65097 ||| ||| || | | | |||| |||| ||||| | |||||||| || | ||| Sbjct 1892701 CTTGTCTCTCTTGGAAACTCCAAGCACTAC---AATTCCACCAATCCATTCGAATTCATG 1892757 Query 65098 GAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGTGATTACT-C 65156 || | ||| ||| |||||||||| ||||| ||||| || |||| ||||| | | Sbjct 1892758 GAAATGATTTCCCTTCAGGGGAAGACCAACTTCTTTGAGAAACGGGTCTCCGATTATTCC 1892817 Query 65157 AAAGC 65161 ||||| Sbjct 1892818 AAAGC 1892822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310300195680