Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6 178 1e-39
seq1 156 5e-33
seq8 98.7 1e-15
seq5 95.1 1e-14
seq3 84.2 2e-11
>seq6
Length=2247897
Score = 178 bits (196), Expect = 1e-39
Identities = 163/206 (79%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| |
Sbjct 301100 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTCT 301159
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||||| || ||||||||||||||||| || || || ||||||
Sbjct 301160 GACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 301219
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || ||||| ||||| |||||||||||||||| || || || | ||||| |||
Sbjct 301220 CAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAAT 301279
Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611
|||| ||||| || |||||||||||
Sbjct 301280 ATCCAGAAGGAGTCGACTCTTCATCT 301305
Score = 161 bits (178), Expect = 1e-34
Identities = 160/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||||||||| || || || ||||| || || || ||||| |||||
Sbjct 301375 AATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACAATCACGCTGGAGGTCGAGTCTTC 301434
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | ||| | ||||| || |||||||||||||| || |||||||| |||||
Sbjct 301435 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 301494
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || ||||| || || ||||| |||||||| | ||| ||||| | ||||| ||
Sbjct 301495 GCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGTCGCACCCTGTCTGACTACAA 301554
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCT 27611
| |||| ||||| ||| ||||| ||
Sbjct 301555 TATCCAGAAGGAGAGCACCCTTCACCT 301581
Score = 150 bits (166), Expect = 2e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || || ||||| || || || ||||| |||||
Sbjct 300303 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTGGAGTCTTCG 300362
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || ||||||| || |||||||||||||| ||||| || || ||||||
Sbjct 300363 GACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCCCCCGACCAG 300422
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || || ||||| |||||||| | || ||||| | ||||||||
Sbjct 300423 CAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTATAAC 300482
Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611
|||| ||||| || || ||||||||
Sbjct 300483 ATCCAGAAGGAGTCGACCCTTCATCT 300508
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| || || |||||||| ||||| || ||||| ||||| |
Sbjct 300872 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300931
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||||| || ||||| || |||||||| ||||| || ||||||
Sbjct 300932 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300991
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || ||||| ||||| || | || || || | ||||||||
Sbjct 300992 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 301051
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| ||||| | ||||| ||| | ||||| || || ||
Sbjct 301052 ATTCAGAAGGAGTCCACCTTGCATCTCGTCCTTCGTCTACGTGGAGG 301098
Score = 129 bits (142), Expect = 7e-25
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || |||||| | || || ||||| || || || ||||| |||||| |
Sbjct 300590 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATCT 300649
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||||| || || |||||||||||||| || || || ||||||
Sbjct 300650 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 300709
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || ||||| |||||||| | || ||||| | ||||||||
Sbjct 300710 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAAC 300769
Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609
| || ||||| || || || |||
Sbjct 300770 ATTCAGAAGGAGTCGACCCTCCAT 300793
>seq1
Length=3258266
Score = 156 bits (172), Expect = 5e-33
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || |||||||| || |||||
Sbjct 2271926 ATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTCTTCG 2271985
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| || ||||||||||||||||| || ||||| ||||||
Sbjct 2271986 GACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAG 2272045
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || |||||||| || || ||||||| || || || | || || |||
Sbjct 2272046 CAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTACAAT 2272105
Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611
|||| ||||| || || ||||| ||
Sbjct 2272106 ATCCAGAAGGAGTCTACCCTTCACCT 2272131
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| || || || || |||||||| || || | ||||| |||||
Sbjct 2272493 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2272552
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | || || || || ||||| |||||||| || || || || ||
Sbjct 2272553 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2272612
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || |||||||| || ||||| |||||||||| || ||||| | ||||| ||
Sbjct 2272613 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2272672
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || ||||| || ||| | ||||||||||| ||
Sbjct 2272673 ATCCAGAAGGAGTCGACGCTTCACCTTGTCCTCCGTCTTCGCGGCGG 2272719
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| | || || ||||| || ||||| ||||| |||||
Sbjct 2272208 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2272267
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || ||||||| || |||||||||||||| || |||||||| ||||||
Sbjct 2272268 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2272327
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | || || ||||| ||||| | ||||||| || || || | || || |||
Sbjct 2272328 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAT 2272387
Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611
| || || || || ||| | || ||
Sbjct 2272388 ATTCAGAAAGAGTCTACTTTGCACCT 2272413
Score = 109 bits (120), Expect = 6e-19
Identities = 184/282 (65%), Gaps = 52/282 (18%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || |||||||||||||| || ||||||||||||||
Sbjct 2271643 ATCATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACTATCACGCTTGAGGTTGAGTCT 2271702
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG-------------- 27508
|||| ||| | ||| | ||||| || |||||||| |||||||
Sbjct 2271703 TCCGATACCATCGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGGTGGGTCCCTCAC 2271762
Query 27509 --------------------------------------GAATTCCTCCAGACCAGCAGCG 27530
| |||||||| ||||| || ||
Sbjct 2271763 GACGTGATCCCTGGCTTCATATCACTCATAGTCGCTTAGCATTCCTCCCGACCAACAACG 2271822
Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590
||| ||||| ||||| || || |||||||||| ||||| | | ||||| || ||||
Sbjct 2271823 TCTCATTTTCGCTGGAAAACAGCTCGAGGATGGCCGTACATTGTCTGACTACAACATCCA 2271882
Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||| ||||||||||| |||||||| || || || ||
Sbjct 2271883 GAAGGAATCGACTCTTCATCTCGTCTTGCGCCTCCGTGGCGG 2271924
>seq8
Length=1872454
Score = 98.7 bits (108), Expect = 1e-15
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570
|| || || ||||||||||| || |||||||| || ||||| ||||| || | ||| |||
Sbjct 434559 ATCCCACCCGACCAGCAGCGCCTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGCACC 434500
Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629
|| ||| || ||||| |||||||||| || || || || || ||| | ||||| |||||
Sbjct 434499 CTCAGC-GATTATAACATCCAAAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGCGG 434441
Query 27630 TGG 27632
|||
Sbjct 434440 TGG 434438
>seq5
Length=2330625
Score = 95.1 bits (104), Expect = 1e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094
||||| ||||| ||||||||||| |||||||| || |||||||||||| | ||||||
Sbjct 514114 CGCGTGCGCAGGTAGTACATGCCGGTCTTGAGCCCACGCTTCCAGCCGTAAAAGTGCATG 514055
Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154
|||||| | || || || || || | || ||| ||||| || ||||| |||
Sbjct 514054 CTGGTGAGCTGGCCGAGCGTCGGAGACTGCAAGTGGACGTTTAGAGATTGTGACTGGCAG 513995
Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214
||||| || ||||| || || || | |||| || ||| || | || ||||| ||
Sbjct 513994 ATGAACGCTCCACGGTCCGCAGCGAGGTCAAGAACCCTCTTCTGCGAGATCTCCCAGACG 513935
Query 80215 GT 80216
||
Sbjct 513934 GT 513933
Score = 91.5 bits (100), Expect = 2e-13
Identities = 308/477 (65%), Gaps = 6/477 (1%)
Strand=Plus/Minus
Query 80538 ACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597
|||||| | ||| ||||| | ||| || ||||| || || | | | | | |||
Sbjct 513550 ACCCCAAAGGTCAAATTGCAACAAGCCTTCGGACGCAGGGCTGCCAGAGTAGGACGAGTA 513491
Query 80598 CGGGCCCTCCGTCTTGGCCAGCTC-ACACGAC--TCCATAAGGGCCGCGTGATAAATGCA 80654
|||||| || ||| |||| ||| |||| | |||| | || || || || ||
Sbjct 513490 CGGGCCATCTTTCTCAGCCATCTCGACACTAGCTTCCACA---GCGGCATGGTATATTGT 513434
Query 80655 CTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCAT 80714
||| |||| || |||| ||||||||| || || | || || || ||
Sbjct 513433 CTCGAAGATCTGCTGATTCAGCTTGCGCGCCTGCTCTGATTCAAAAGGCATGCGCAAGAT 513374
Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774
|||||| || || || ||||| ||||||| | || |||||||| ||| |||| ||
Sbjct 513373 CATGAAAGTATCCGCAAGACCCTGCACGCCGAGACCAATAGGGCGGTGACGCATGTTGGA 513314
Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834
| ||| |||| ||||| |||| ||||||| |||||||||||| |
Sbjct 513313 ATTACGTGACTCAGGAACGGGGTAGTAGTTGACGTCGATGATACGGTTCAGGTTGAAGGC 513254
Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGC 80894
|||||| | ||| | |||||||| || |||||| || | |||| || | |
Sbjct 513253 CACAACCTTGGCGACAGCGTGAAGTTTATGGAAGTCGTATACGCCATCCTTGACGTAAGT 513194
Query 80895 CGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGAC 80954
||||| ||||| || || ||||| || || ||| || | | | | ||||
Sbjct 513193 AGGAAGCGCAAGGGAAGCAAGGTTGCAGACTGCGGTCTCATCTGGAGAAGAGTATTCGAT 513134
Query 80955 GATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011
||| || ||||| | ||| ||||| || || || || || || || ||||| || ||
Sbjct 513133 GATCTCAGTGCATAGATTGGAAGATTTGATCGTCCCGAGATTCTTTTGGTTAGATTT 513077
>seq3
Length=3164952
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 7/230 (3%)
Strand=Plus/Minus
Query 64666 AAGGCTGAATGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCGTTTGGTCAGCGTCTC 64722
||||| || ||||| | || ||||| ||||| | || | |||| | |||| |
Sbjct 1890361 AAGGCGGACTGGGCACTACGCTGGATCTCCGATCGTCGCTCCACATTTGCTGAGCGATTA 1890302
Query 64723 GCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGG 64782
| || || ||| |||||| || |||||||| || || || ||| || || ||||||
Sbjct 1890301 GTCGCCTTCGCCGCTGTGGAGGGCATTTTCTTCTCCGGTTCTTTCGCCTCAATCTTCTGG 1890242
Query 64783 CTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGAC 64842
| || ||||| ||||| ||||| || || | || || || || || ||| ||| |||
Sbjct 1890241 TTGAAGAAGCGTGGCCTCATGCCTGGACTCACCTTCTCCAATGAACTCATCAGTCGTGAC 1890182
Query 64843 GAGGGGCTCCACCAAGAATTTGC--GGTTACCCTGTTCAGCCACCTCAAG 64890
||||| | || || || || | || | |||||||||| ||||||
Sbjct 1890181 GAGGGAATGCATACCGACTTCGCATGCTTGC--TGTTCAGCCATCTCAAG 1890134
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/185 (71%), Gaps = 7/185 (4%)
Strand=Plus/Plus
Query 64981 CTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGATCGCCTG 65040
|||||||| ||| |||||| |||| || || || |||||||| || |||||||||
Sbjct 1892641 CTCATCGGAATGAATGCCGCCCTGATGCGTCAATACATAGAATTTGTCGCTGATCGCCTG 1892700
Query 65041 CTT-ACTCAGTTTGGTATT--AAGCCCTACTGGAATTCTTCAAATCCATTTGACTGGATG 65097
||| ||| || | | | |||| |||| ||||| | |||||||| || | |||
Sbjct 1892701 CTTGTCTCTCTTGGAAACTCCAAGCACTAC---AATTCCACCAATCCATTCGAATTCATG 1892757
Query 65098 GAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGGTGATTACT-C 65156
|| | ||| ||| |||||||||| ||||| ||||| || |||| ||||| | |
Sbjct 1892758 GAAATGATTTCCCTTCAGGGGAAGACCAACTTCTTTGAGAAACGGGTCTCCGATTATTCC 1892817
Query 65157 AAAGC 65161
|||||
Sbjct 1892818 AAAGC 1892822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310300195680
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