Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 8e-23
seq6 111 1e-19
>seq1
Length=3258266
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| ||||| |||||| | || || | || || || |||||
Sbjct 2272493 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCC 2272552
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| || || || || || || ||||| ||||| ||||||
Sbjct 2272553 GACACAATCGATAATGTCAAAGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGATCAA 2272612
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || ||||| || | || || | |||| ||||||| ||||||
Sbjct 2272613 CAGCGCCTTATTTTTGCGGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCCGACTACAAC 2272672
Query 27168 ATTCAAAAGGAGTCGAC 27184
|| || |||||||||||
Sbjct 2272673 ATCCAGAAGGAGTCGAC 2272689
Score = 113 bits (124), Expect = 4e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043
|| ||||||||| || || || || |||| |||||| | || |||||||||||||| |
Sbjct 2271922 CGGCATGCAGATCTTCGTCAAGACATTGACGGGCAAGACCATCACTCTTGAAGTGGAGTC 2271981
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
|| ||| | || || | ||||| || ||||| ||||| || || || || |||||
Sbjct 2271982 TTCGGACACTATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCCGA 2272041
Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163
|| |||||| | || | ||| || ||||| | || || | || ||||||||||
Sbjct 2272042 CCAGCAGCGTCTTATCTTCGCTGGTAAACAGCTTGAGGATGGGCGCACGCTTTCCGATTA 2272101
Query 27164 CAACATTCAAAAGGAGTCGACC 27185
||| || || |||||||| |||
Sbjct 2272102 CAATATCCAGAAGGAGTCTACC 2272123
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || ||||| ||| |||| || ||| | || ||||| || || || | ||
Sbjct 2272207 CATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTC 2272266
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| | ||||| | || || || ||||| ||||| ||||| || || ||||| ||
Sbjct 2272267 GGACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCA 2272326
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|| || || || | ||| || || || ||||| || | || | |||||||||||
Sbjct 2272327 GCAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAA 2272386
Query 27167 CATTCAAAAGGAGTCGACCTTACA 27190
||||| || ||||| || || ||
Sbjct 2272387 TATTCAGAAAGAGTCTACTTTGCA 2272410
Score = 100 bits (110), Expect = 2e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || |||||| | || || | || || || | ||
Sbjct 2272721 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2272780
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| |||| || | || || || ||||||||||| |||||||| || || || ||
Sbjct 2272781 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGCATCCCGCCGGACCAG 2272840
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | || ||||| |||||||| ||| || || |||| |||||||||
Sbjct 2272841 CAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGGATTACAAC 2272900
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGG 27195
||||| || ||| ||| | ||| |||
Sbjct 2272901 ATTCAGAAAGAGAGCACCCTCCATCTGG 2272928
>seq6
Length=2247897
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || |||| || ||| | || || || || ||||| | ||
Sbjct 300589 CATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACGATCACGCTCGAGGTGGAGTCATC 300648
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| |||| || | ||||| || || || ||||| || ||||| || || || ||
Sbjct 300649 TGACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 300708
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||| || || | ||| ||||| || | || ||| | ||| |||| || || ||
Sbjct 300709 GCAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCTGACTATAA 300768
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGG 27195
|||||| |||||||||||| | |||||||
Sbjct 300769 CATTCAGAAGGAGTCGACCCTCCATTTGG 300797
Score = 109 bits (120), Expect = 5e-19
Identities = 164/231 (71%), Gaps = 3/231 (1%)
Strand=Plus/Plus
Query 26979 TTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTG 27038
||||| | ||||||||| || || || || || || || ||| | || || || || |||
Sbjct 300295 TTATA-GACATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACGATCACCCTCGAGGTG 300353
Query 27039 GAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCA 27098
|| | || ||| | || || | || || || ||||| ||||| ||||| || ||
Sbjct 300354 GAGTCTTCGGACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGAATCCCC 300413
Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC 27158
||||| || |||||||| || | ||| ||||| || | || ||| | ||| ||||
Sbjct 300414 CCCGACCAGCAGCGTTTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCG 300473
Query 27159 GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGG 27209
|| || ||||| || |||||||||||| | ||| | | |||||||| ||
Sbjct 300474 GACTATAACATCCAGAAGGAGTCGACCCTTCATCTCG--GTGCGTTTGAGG 300522
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
||||||||| || || || || ||||| |||||| | || || || || || || ||||
Sbjct 301099 CATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 301158
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
||| |||| || | || || ||| ||||| ||||| || || || || || || ||
Sbjct 301159 TGACACGATCGACAACGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 301218
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
||||| | || | ||| ||||| ||| | || || | || |||| || |||||
Sbjct 301219 GCAGCGCCTCATTTTCGCTGGCAAGCAACTCGAGGATGGACGCACTCTTTCGGACTACAA 301278
Query 27167 CATTCAAAAGGAGTCGAC 27184
|| || |||||||||||
Sbjct 301279 TATCCAGAAGGAGTCGAC 301296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434918323889280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |