Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq6 98.7 7e-16 >seq1 Length=3258266 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | ||||| || |||||||||||||| || || || || Sbjct 2272208 ATGCAGATTTTCGTAAAGACTTTGACGGGGAAGACGATCACTCTCGAGGTCGAGTCTTCG 2272267 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || || ||| ||||| ||||| | || || || || Sbjct 2272268 GACACTATTGACAACGTGAAGGCGAAGATTCAGGACAAGGAAGGGATTCCTCCCGACCAG 2272327 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || || || || |||| || | || ||| | ||||||||| Sbjct 2272328 CAACGGTTGATCTTCGCTGGAAAGCAGTTGGAGGATGGGCGAACTCTCTCCGATTACAAT 2272387 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || || |||||||| || || || Sbjct 2272388 ATTCAGAAAGAGTCTACTTTGCA 2272410 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| | || || || || || Sbjct 2272721 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACAATCACGTTGGAGGTAGAGTCTTCG 2272780 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| ||||| | ||||| || || Sbjct 2272781 GACACGATCGATAATGTGAAGGCGAAGA-TTCAAGACAAGGAAGGCATCCCGCCGGACCA 2272839 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTAC 23787 || || | || ||||| ||||| ||| |||| |||| ||||| ||| || ||||| Sbjct 2272840 GCAACGCCTGATTTTTGCGGGCAAGCAATTGGAGGACGGTCGCACACTTTCGG--ATTAC 2272897 Query 23788 AACATACAAAAAGAG 23802 ||||| || |||||| Sbjct 2272898 AACATTCAGAAAGAG 2272912 >seq6 Length=2247897 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||||||||| || ||||| || ||||| || || || | Sbjct 300872 ATGCAAATTTTCGTCAAGACCCTCACGGGCAAGACGATTACGCTCGAGGTCGAGTCTTCT 300931 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || || || || | || || || || Sbjct 300932 GACACGATCGATAACGTGAAGGCGAAGATTCAAGATAAGGAGGGCATTCCCCCGGACCAG 300991 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || ||||| || || ||||||| |||||| | ||| || ||| Sbjct 300992 CAGCGCTTGATCTTCGCGGGCAAGCAGCTCGAAGACGGCCGCACTCTTTCCGACTATAAC 301051 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || |||||||| || ||| Sbjct 301052 ATTCAGAAGGAGTCCACCTTGCAT 301075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009542327112