Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq3 141 8e-29
>seq3
Length=3164952
Score = 141 bits (156), Expect = 8e-29
Identities = 374/569 (66%), Gaps = 9/569 (2%)
Strand=Plus/Minus
Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598
||||| | ||| |||||||| ||||| |||||||| | ||||||||||||||||||
Sbjct 1892487 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1892428
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658
|| ||||| || ||||| | ||||| || || ||||| || || | ||||| || ||
Sbjct 1892427 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1892368
Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718
|| ||||| || |||||||| || || ||||| || || | | | |||| |
Sbjct 1892367 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT 1892308
Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778
| ||| ||||| | | ||||| | | || | ||| ||||| || || || |
Sbjct 1892307 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1892248
Query 4779 ATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGT 4835
|| | || || | || | | | | ||| || || || || || ||
Sbjct 1892247 ATCGAATTGAAGAGGAGGCCACGCTGCTGA---GAGTCAGAGATGTAGGTATCGATGAGG 1892191
Query 4836 AGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTA 4895
|| || |||| || || || ||||| || || |||||||| ||||| || |
Sbjct 1892190 AGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGG 1892131
Query 4896 GCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCG 4955
|||| | |||| |||||| | |||| | || || | || ||||| || ||||||
Sbjct 1892130 ACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCG 1892071
Query 4956 TCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGT 5015
|| || |||||||| |||| |||| ||||| || | |||||| || ||
Sbjct 1892070 TCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGG 1892011
Query 5016 TT---TTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGAC 5072
|| ||||||| | | |||||| | | ||| | ||||| |||||||||||
Sbjct 1892010 TTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAA 1891951
Query 5073 GCTTCCGCTTTTTTGTACATAGACCAAAT 5101
|| | ||||| |||||||| ||||||
Sbjct 1891950 GCCTGGGCTTTCTTGTACATCTGCCAAAT 1891922
Score = 131 bits (144), Expect = 1e-25
Identities = 367/559 (66%), Gaps = 7/559 (1%)
Strand=Plus/Plus
Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598
|||| || || || || || ||||| || ||||| | || || ||||| || ||
Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658
|| || | ||| ||||| | || | ||| || | ||| || || | ||| || || ||
Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266
Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718
|| ||||| ||||| || || ||||| || || |||||||| | || | | |
Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAATCGCTCAGCAAATGTGGAGCGA 1890326
Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778
|| ||||| || |||||||| || || | || || || ||||| || |
Sbjct 1890327 CGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTCTCA 1890386
Query 4779 ATAGCGTTAAATAATTTACTTT--TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTA 4836
| ||| | || || |||| || | | || ||||| | ||||| || || || |
Sbjct 1890387 ACAGCATCGAA-AAGGTACTCGCGTTGCTTAGGGTCCTTGA-TGTAAGTATCGATAAGAA 1890444
Query 4837 GGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG 4896
|| || | || || |||||||| || ||| || || ||||| ||||| | |
Sbjct 1890445 GGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCAACGCG 1890504
Query 4897 CTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956
| || | | ||||| ||||| | || | || || | ||| ||||| || || || |
Sbjct 1890505 CCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGATGCCAT 1890564
Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA--- 5013
|| ||| ||||||||||| | ||||| || | ||||| | || | ||||
Sbjct 1890565 CAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTTAAGGC 1890624
Query 5014 GTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073
| || ||||||| | | | |||||| | | || | ||||| ||||||| || ||||
Sbjct 1890625 GGTTATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCAGAAAGACG 1890684
Query 5074 CTTCCGCTTTTTTGTACAT 5092
|||| ||||||||||||||
Sbjct 1890685 CTTCAGCTTTTTTGTACAT 1890703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427049527134662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |