Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11- 03] 14 sequences; 27,988,318 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 >seq3 Length=3164952 Score = 187 bits (206), Expect = 3e-42 Identities = 387/572 (68%), Gaps = 18/572 (3%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| | ||| |||||||| ||| | ||||| || | |||||| | |||||||||| Sbjct 1892487 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1892428 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || | ||| ||||| || || ||||| || ||||| || |||| || |||||||| Sbjct 1892427 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1892368 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311 || ||||| || |||||||| ||||| || || | ||| | | | | || Sbjct 1892367 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGAC-CG 1892309 Query 48312 TTGTGT-----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 ||| || ||||||| | ||||| || | ||||| ||| || || || || || | Sbjct 1892308 TTG-GTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCT 1892250 Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTATT 48422 | || | ||| ||||| | | | |||| || | ||| ||||| || Sbjct 1892249 CGATCGAATTGAAGAGGAGGCCA----CGCTGCTGAGAGTCAGAGATGTAGGTATCGATG 1892194 Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482 | ||| || |||| |||||||| ||||| || || |||||||| |||||||| Sbjct 1892193 AGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAG 1892134 Query 48483 CTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT 48542 | |||| | | ||||| || | |||| || || ||| |||||| || || || Sbjct 1892133 CGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATA 1892074 Query 48543 CCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTC 48602 || || ||| ||||||||||| | |||| | || |||| ||||||| | || Sbjct 1892073 CCGTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTC 1892014 Query 48603 AGTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659 || ||| |||||||| ||||||||| || ||||| | ||||| | |||||||| Sbjct 1892013 AGGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAAC 1891954 Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || |||| ||||| || ||||| | ||| || Sbjct 1891953 GAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1891922 Score = 156 bits (172), Expect = 6e-33 Identities = 384/576 (67%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 |||| || ||||| || || ||| | || || || | ||| || | ||| || || Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || ||||| || ||||| || ||||| || || | ||| || |||| |||||||| || Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGG-TAAGTCTCTCTCCGTAACTG----G 48306 || ||||| ||||| || || || || || ||| ||| || ||| | || || | Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAA---TCGCTCAGCAAATGTGGAG 1890323 Query 48307 CTTCGTTGTGT-ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 | || | | ||||| ||| ||||||| || |||||| | || ||||| || || || Sbjct 1890324 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTC 1890383 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTAT 48421 || | ||||| || ||| | | | ||||| || || | ||||||||| || Sbjct 1890384 TCAACAGCATCGAA----AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGAT 1890439 Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481 | ||| || | ||| ||| |||||||| || || || || ||||| || || Sbjct 1890440 AAGAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCA 1890499 Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541 | ||| || | ||| ||||| | | || || ||| | | ||||| || || || Sbjct 1890500 ACGCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGAT 1890559 Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT------TTTTCGTT 48595 |||||| || |||||||| || | ||||| | ||| | || ||||| Sbjct 1890560 GCCATCAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTT 1890619 Query 48596 GGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 ||| | ||| ||||||||| | || ||||||||| | || | ||||| || ||||| Sbjct 1890620 --AAGGCGGTT-ATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCA 1890676 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || || || |||||||| ||||| | ||| || Sbjct 1890677 GAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGAT 1890712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668678432960