Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq3 187 3e-42
>seq3
Length=3164952
Score = 187 bits (206), Expect = 3e-42
Identities = 387/572 (68%), Gaps = 18/572 (3%)
Strand=Plus/Minus
Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191
|||| | ||| |||||||| ||| | ||||| || | |||||| | ||||||||||
Sbjct 1892487 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1892428
Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251
|| || | ||| ||||| || || ||||| || ||||| || |||| || ||||||||
Sbjct 1892427 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1892368
Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG 48311
|| ||||| || |||||||| ||||| || || | ||| | | | | ||
Sbjct 1892367 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGAC-CG 1892309
Query 48312 TTGTGT-----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366
||| || ||||||| | ||||| || | ||||| ||| || || || || || |
Sbjct 1892308 TTG-GTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCT 1892250
Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTATT 48422
| || | ||| ||||| | | | |||| || | ||| ||||| ||
Sbjct 1892249 CGATCGAATTGAAGAGGAGGCCA----CGCTGCTGAGAGTCAGAGATGTAGGTATCGATG 1892194
Query 48423 AAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACAT 48482
| ||| || |||| |||||||| ||||| || || |||||||| ||||||||
Sbjct 1892193 AGGAGAGAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAG 1892134
Query 48483 CTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATT 48542
| |||| | | ||||| || | |||| || || ||| |||||| || || ||
Sbjct 1892133 CGGACTTCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATA 1892074
Query 48543 CCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTC 48602
|| || ||| ||||||||||| | |||| | || |||| ||||||| | ||
Sbjct 1892073 CCGTCGGAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTC 1892014
Query 48603 AGTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAAT 48659
|| ||| |||||||| ||||||||| || ||||| | ||||| | ||||||||
Sbjct 1892013 AGGTTATCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAAC 1891954
Query 48660 GATGCCTCTGCTTTTTTATACATATTCCATAT 48691
|| |||| ||||| || ||||| | ||| ||
Sbjct 1891953 GAAGCCTGGGCTTTCTTGTACATCTGCCAAAT 1891922
Score = 156 bits (172), Expect = 6e-33
Identities = 384/576 (67%), Gaps = 26/576 (5%)
Strand=Plus/Plus
Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191
|||| || ||||| || || ||| | || || || | ||| || | ||| || ||
Sbjct 1890147 AACAGCAAGCATGCGAAGTCGGTATGCATTCCCTCGTCACGACTGATGAGTTCATTGGAG 1890206
Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251
|| ||||| || ||||| || ||||| || || | ||| || |||| |||||||| ||
Sbjct 1890207 AAGGTGAGTCCAGGCATGAGGCCACGCTTCTTCAACCAGAAGATTGAGGCGAAAGAACCG 1890266
Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGG-TAAGTCTCTCTCCGTAACTG----G 48306
|| ||||| ||||| || || || || || ||| ||| || ||| | || || |
Sbjct 1890267 GAGAAGAAAATGCCCTCCACAGCGGCGAAGGCGACTAA---TCGCTCAGCAAATGTGGAG 1890323
Query 48307 CTTCGTTGTGT-ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365
| || | | ||||| ||| ||||||| || |||||| | || ||||| || || ||
Sbjct 1890324 CGACGATCGGAGATCCAGCGTAGTGCCCAGTCCGCCTTCCTTTTGACACAGGGAATGGTC 1890383
Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTA----TCTTTAACGTAAGTATCTAT 48421
|| | ||||| || ||| | | | ||||| || || | ||||||||| ||
Sbjct 1890384 TCAACAGCATCGAA----AAGGTACTCGCGTTGCTTAGGGTCCTTGATGTAAGTATCGAT 1890439
Query 48422 TAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACA 48481
| ||| || | ||| ||| |||||||| || || || || ||||| || ||
Sbjct 1890440 AAGAAGGGAGTAGGTCTCGCTGTGGATATTTTCCATCATAATTTGGAACCCGTAGAAGCA 1890499
Query 48482 TCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTAT 48541
| ||| || | ||| ||||| | | || || ||| | | ||||| || || ||
Sbjct 1890500 ACGCGCCTCAGCCGCCTGAACCTCGTTCGAGAAGCGCTCAACAAGGTTCTCGTTGACGAT 1890559
Query 48542 TCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT------TTTTCGTT 48595
|||||| || |||||||| || | ||||| | ||| | || |||||
Sbjct 1890560 GCCATCAGAGGCGGCAAAAAACGCGAGGACATGCGAGACAAAGTGACGCTCATTGTCGTT 1890619
Query 48596 GGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655
||| | ||| ||||||||| | || ||||||||| | || | ||||| || |||||
Sbjct 1890620 --AAGGCGGTT-ATTCCAGTCGTGGAGATCTTTTGACAGGTCCATCTCTTCGGCAGTCCA 1890676
Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691
|| || || || |||||||| ||||| | ||| ||
Sbjct 1890677 GAAAGACGCTTCAGCTTTTTTGTACATTTGCCAGAT 1890712
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668678432960
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