Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq3 174 2e-38
>seq3
Length=3164952
Score = 174 bits (192), Expect = 2e-38
Identities = 380/566 (67%), Gaps = 6/566 (1%)
Strand=Plus/Minus
Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680
|||| | ||| |||||||| ||| | ||||| || | |||||| | ||||||||||
Sbjct 1892487 AACAAGAGACAGGCAAAATCTGTATGCATCCCTTCGTCCCGACTAATCAGTTCGTTAGAA 1892428
Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740
|| || | |||||||| || || || || || ||||| || || | || ||||||||
Sbjct 1892427 AAGGTTAAACCAGGCATGAGACCTCGTTTCTTCAGCCAGAAGATTGAAGCAAAAGATCCG 1892368
Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG--CAT 46798
|| ||||| || |||||||| |||||||| || || | ||| | | | | | |
Sbjct 1892367 GAGAAGAAGATCCCTTCTACCGCCGCGAACGCCACCAACCTCGTGGCAAACGTCGACCGT 1892308
Query 46799 CATTATGA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857
| || |||||||| | ||||| || | ||| | ||| || || || || || ||
Sbjct 1892307 TGGTCAGAGATCCACCTGAGGGCCCACTCGGTCTTCTGCTTGACGCATGGTATAGTCTCG 1892248
Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917
|| | ||| ||||| | | | | | || | || ||||| || | |||
Sbjct 1892247 ATCGAATTGAAGAGGAGGCCACGCTGCTGAGAGTCAGAGATGTAGGTATCGATGAGGAGA 1892188
Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977
|| |||| || ||||||||||| || || |||||||| |||||||| | ||
Sbjct 1892187 GAGTATGTTTCCGAGTGAATGTTTTCCATCATGATTTGAAATCCATAAAAACAGCGGACT 1892128
Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037
|||| ||||| || | |||| || || || |||||| || || || || ||
Sbjct 1892127 TCAGCGGCTTGTACTTCGCTCGAAAACCGCTCCACCAGATTCTCGTTGACAATACCGTCG 1892068
Query 47038 CTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA 47097
||| ||||||||||||| |||| | || |||| ||| | | | |||| |||
Sbjct 1892067 GAAGCGGCAAAAAATGCCAGGACATATGATATGAAATGGCGTTCGTTGTCATTCAGGTTA 1892008
Query 47098 ---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154
|||||||| ||||||||| || ||||| | ||||| | ||||| || || |||
Sbjct 1892007 TCGTTCCAGTCGAAGATATCTTTGGACATATCGATCTCTTCGGACGTCCAAAACGAAGCC 1891948
Query 47155 TCTGCTTTTTTATACATATTCCATAT 47180
| ||||| || ||||| | ||| ||
Sbjct 1891947 TGGGCTTTCTTGTACATCTGCCAAAT 1891922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712934275236480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |