Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterobasidion_20annosum_20[genbank_20GCA_5F001457955.1_202015-11-
03] 14 sequences; 27,988,318 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1 174 3e-38
seq6 168 1e-36
seq3 87.8 4e-12
seq8 86.0 1e-11
>seq1
Length=3258266
Score = 174 bits (192), Expect = 3e-38
Identities = 153/191 (80%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || ||||| ||||| || | ||||||||| |||||||| || ||||| || || |||
Sbjct 2272116 TCCTTCTGGATATTGTAATCGGAAAGCGTGCGCCCATCCTCAAGCTGTTTACCAGCGAAG 2272057
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | ||| || ||||| || |||||||||||||| || ||||| || || || |
Sbjct 2272056 ATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTG 2271997
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|||||||||||||||| || ||||| |||||||| ||||| |||||||| ||||| |||
Sbjct 2271996 TCGATAGTGTCCGAAGACTCCACTTCAAGAGTGATGGTCTTGCCCGTCAATGTCTTGACG 2271937
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 2271936 AAGATCTGCAT 2271926
Score = 168 bits (186), Expect = 1e-36
Identities = 152/191 (80%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| || || ||||| || | || || || |||||||| | || || || || |||
Sbjct 2272398 TCTTTCTGAATATTGTAATCGGAGAGAGTTCGCCCATCCTCCAACTGCTTTCCAGCGAAG 2272339
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| ||||| ||||| ||||| || |||||||| || ||||| || || ||| |
Sbjct 2272338 ATCAACCGTTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTG 2272279
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 2272278 TCAATAGTGTCCGAAGACTCGACCTCGAGAGTGATCGTCTTCCCCGTCAAAGTCTTTACG 2272219
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 2272218 AAAATCTGCAT 2272208
Score = 154 bits (170), Expect = 3e-32
Identities = 159/208 (76%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 282892 CCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTA 282951
||||||| | ||||| ||||| || |||||||| || | ||| ||||| || ||||| |
Sbjct 2272928 CCAGATGGAGGGTGCTCTCTTTCTGAATGTTGTAATCCGAAAGTGTGCGACCGTCCTCCA 2272869
Query 282952 GTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGA 283011
||| || || ||||| |||| ||||| ||||| ||| || || ||||||||||| |
Sbjct 2272868 ATTGCTTGCCCGCAAAAATCAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGAA 2272809
Query 283012 TCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTAC 283071
|||| || || || ||||||| |||||||||| || || || | ||||| ||||| |
Sbjct 2272808 TCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCTACCTCCAACGTGATTGTCTTGC 2272749
Query 283072 CCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || | ||||| ||||| ||||||||
Sbjct 2272748 CTGTGAGGGTCTTGACGAAGATCTGCAT 2272721
Score = 136 bits (150), Expect = 8e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || || || || || || | ||| || || |||||||||||||| |
Sbjct 2272720 ACCGCCGCGAAGACGGAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGA 2272661
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||||||||| || || || || ||||| || | || ||||| || ||
Sbjct 2272660 AAGGGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAAATAAGGCGCTGTTGATCCGGTGG 2272601
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||| || |||||||| ||||| || ||||||| ||||| || | |||||
Sbjct 2272600 GATGCCCTCCTTATCCTGGATCTTCGCTTTGACATTATCGATTGTGTCGGACGACTCGAC 2272541
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||| ||||| || |||| || || || || ||||||||
Sbjct 2272540 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 2272493
Score = 105 bits (116), Expect = 1e-17
Identities = 90/110 (82%), Gaps = 1/110 (1%)
Strand=Plus/Plus
Query 282994 TACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||| ||||||| |||||||| ||||| ||| | ||||| ||||| |||| || ||
Sbjct 638462 TACCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAAGACTCCACC 638521
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || ||||||||||| ||||| | ||||| ||||| |||||||||||
Sbjct 638522 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATTTT 638571
>seq6
Length=2247897
Score = 168 bits (186), Expect = 1e-36
Identities = 152/191 (80%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || ||||| ||||||| ||| |||||||| ||||| || || || || || |||
Sbjct 300780 TCCTTCTGAATGTTATAGTCAGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 300721
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| || || |||||| || || ||||||||||| |||||||| || || ||| ||
Sbjct 300720 ATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTA 300661
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| ||||| || | || || ||||| ||||||||||| || ||||| ||||| |||
Sbjct 300660 TCGATCGTGTCAGATGACTCCACCTCGAGCGTGATCGTCTTTCCAGTCAACGTCTTCACG 300601
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 300600 AAGATCTGCAT 300590
Score = 165 bits (182), Expect = 2e-35
Identities = 151/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || ||||| |||||||| | ||| ||||| |||||||| ||||| || || || ||
Sbjct 301290 TCCTTCTGGATATTGTAGTCCGAAAGAGTGCGTCCATCCTCGAGTTGCTTGCCAGCGAAA 301231
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | || || |||||| ||| |||||||||||||| || |||||||| || ||| |
Sbjct 301230 ATGAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACGTTG 301171
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| ||||| || | ||||| ||||| ||||||||||| || |||| ||||| |||
Sbjct 301170 TCGATCGTGTCAGACGACTCGACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACG 301111
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 301110 AAGATCTGCAT 301100
Score = 159 bits (176), Expect = 7e-34
Identities = 150/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || |||||||| ||||| | ||| |||||||| ||||| || || || || || |||
Sbjct 300493 TCCTTCTGGATGTTATAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 300434
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|||||||| || ||||| || || || |||||||| || ||||| || || ||| ||
Sbjct 300433 ATCAAACGCTGCTGGTCGGGGGGGATTCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTA 300374
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| |||||||||| || || ||||| ||||||||||| || || | ||||| |||
Sbjct 300373 TCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCAGTGAGGGTCTTCACG 300314
Query 283089 AATATCTGCAT 283099
|| ||||||||
Sbjct 300313 AAGATCTGCAT 300303
Score = 141 bits (156), Expect = 2e-28
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 282903 GTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCG 282962
||||| || || ||||| |||||||||| || ||||| || ||||| || || || ||
Sbjct 301572 GTGCTCTCCTTCTGGATATTGTAGTCAGACAGGGTGCGACCGTCCTCGAGCTGCTTGCCC 301513
Query 282963 GCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTT 283022
|| || || | || || ||||| ||||| || |||||||| || ||||| || ||
Sbjct 301512 GCGAAAATGAGGCGCTGCTGGTCGGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCCTTG 301453
Query 283023 ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082
|| | ||||| |||||||||| ||||| || || ||||| ||||||||||| | |||
Sbjct 301452 ACATTGTCGATCGTGTCCGAAGACTCGACCTCCAGCGTGATTGTCTTACCCGTGAGGGTC 301393
Query 283083 TTAACGAATATCTGCATT 283100
|| || || |||||||||
Sbjct 301392 TTGACAAAGATCTGCATT 301375
>seq3
Length=3164952
Score = 87.8 bits (96), Expect = 4e-12
Identities = 130/183 (71%), Gaps = 1/183 (1%)
Strand=Plus/Minus
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
|| || ||||||||||| | |||||| | || || ||||| || || || || ||| |
Sbjct 1889990 CTGATTGGCATGAATGCCAAGCTCATGTGCCAGTACATCGAGTTTGTTGCAGACCGTCTG 1889931
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
|| | || || || ||| || || ||| | | |||||||||| ||||||||
Sbjct 1889930 CTCATTGCCCTCGGTGGCGAAAAGCACTACAACGCGACAAACCCCTTCGACTTTATGGAC 1889871
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAG 230401
| || || | |||||||| || |||||||| || ||||| || ||||| ||||||
Sbjct 1889870 ATGATCTCTTTGCAGGGGAAGACCAACTTCTTTGAGAAGCGGGTGTCGGATTACTCAAAG 1889811
Query 230402 GCC 230404
|||
Sbjct 1889810 GCC 1889808
>seq8
Length=1872454
Score = 86.0 bits (94), Expect = 1e-11
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055
||||||||||| |||||||| || || || | ||||| |||||||||| ||||| ||
Sbjct 434622 CCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCA 434681
Query 283056 AGAGTGATCGTCTTACCCGT 283075
|||||||| |||||||||||
Sbjct 434682 AGAGTGATGGTCTTACCCGT 434701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046739012241156
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